Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2683473 87.8 2e-12 seq2129313 87.8 2e-12 seq2066332 82.4 9e-11 >seq2683473 Length=2397 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 118814 ||||| | |||||| ||||| | || |||| ||| ||||| ||||| |||| ||| || Sbjct 1593 TACTCAACAATTTCTGTGCAGAGATTAGAACACTTGATGGTACCCAAATTCTGTTGGTTG 1652 Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 118865 |||| | || || ||||| ||||| |||||||||||||| || || ||| Sbjct 1653 CTCTTTCTATTGCATGCATCTTTGTATAGCATGTATGGCGTTCCAGTTTCC 1703 >seq2129313 Length=838 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 118814 ||||| | |||||| ||||| | || |||| ||| ||||| ||||| |||| ||| || Sbjct 802 TACTCAACAATTTCTGTGCAGAGATTAGAACACTTGATGGTACCCAAATTCTGTTGGTTG 743 Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 118865 |||| | || || ||||| ||||| |||||||||||||| || || ||| Sbjct 742 CTCTTTCTATTGCATGCATCTTTGTATAGCATGTATGGCGTTCCAGTTTCC 692 >seq2066332 Length=782 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240 ||| ||||||| ||||||| ||| | | |||||||| |||||||||||||| ||||| Sbjct 340 ATATATATTGGAGGTGTATGCCTCGACAGATTCATTGTTCCCCAAGATTTGGGCGGTGGA 281 Query 118241 GGCTGTGGGCATGGGTGC 118258 |||||| |||||||| || Sbjct 280 GGCTGTTGGCATGGGAGC 263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597170985926720