Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2645534 118 1e-21 >seq2645534 Length=2039 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| ||||||||||| |||||||| ||| | ||||| || || Sbjct 401 GTGAAGATGTATCGAGGACTTGCAGCATCTTTGCCACCTTGAAGTCTAGTACCAAACTGA 342 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | || | ||| | |||||| | || ||||||||||| |||||||||| | Sbjct 341 CCAATGGGTTGCAGCAAGTTGATGTTGTTTGAACCAACAAAGTTTTGTGCCAAGTTGATA 282 Query 117425 ATCG-TACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 || | | || | | | | | |||||||| |||||||| | ||||| || ||| || Sbjct 281 ATGGTTCCCATTAAAGATTG-TTCACCATGATGATACGCAGAGTGCTCAGCAACGGCACC 223 Query 117484 CGCCAGCTGAGCCACCTTCATGTC 117507 || |||||||| ||||| || || Sbjct 222 AGCTAGCTGAGCAACCTTGATCTC 199 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || ||||| ||||||||| || | || |||||||| Sbjct 401 GTGAAGATGTATCGAGGACTTGCAGCATCTTTGCCACCTTGAAGTCTAGTACCAAACTGA 342 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | || | ||||| |||||| | || || || || || ||||| || | | Sbjct 341 CCAATGGGTTGCAGCAAGTTGATGTTGTTTGAACCAACAAAGTTTTGTGCCAAGTTGATA 282 Query 152149 ATCGTGCCC--TGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 || || ||| | ||| | |||||| || |||||||| | ||||| || | | | Sbjct 281 ATGGTTCCCATTAAAGATT--GTTCACCATGATGATACGCAGAGTGCTCAGCAACGGCAC 224 Query 152207 CCGCCAACTGCGCCACCTTCATGTC 152231 | || | ||| || ||||| || || Sbjct 223 CAGCTAGCTGAGCAACCTTGATCTC 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 528400579777600