Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2732657 149 7e-31 seq2408123 104 3e-17 seq2750648 98.7 1e-15 seq2645534 98.7 1e-15 seq2412204 95.1 1e-14 >seq2732657 Length=3626 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| ||||| || || || ||||| || || || ||| | Sbjct 2461 ATGCAAATTTTTGTGAAGACCCTTACAGGAAAAACAATTACCCTAGAAGTGGAGCCTTCA 2402 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || ||||| |||||||| || || |||||||||||| Sbjct 2401 GACACCATTGAGAATGTAAAGGCAAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 2342 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| ||| || || | ||||| ||| Sbjct 2341 CAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGATGGTCGCACTCTGTCTGACTACAAT 2282 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| || || ||| |||| | | ||| | ||||| Sbjct 2281 ATTCAGAAGGAATCTACACTCCATTTAGTTCTTAGGCTTAGAGGTGG 2235 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || || ||||| || || ||||||||||| || Sbjct 3145 ATGCAGATCTTTGTGAAAACCCTCACAGGAAAGACCATCACACTTGAGGTTGAACCATCA 3086 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | || ||||| || || || ||||| || ||||| ||||||||| Sbjct 3085 GATACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 3026 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||| ||||| ||||| || |||| || || | | ||||| || Sbjct 3025 CAAAGGCTGATCTTTGCAGGTAAACAACTGGAAGATGGCCGCACATTGTCTGACTACAAC 2966 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| |||||||| || || | || ||| | ||||| Sbjct 2965 ATTCAGAAGGAATCTACTCTTCACCTTGTACTCCGACTTAGAGGTGG 2919 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || || || || || || |||||||||||| || | Sbjct 2689 ATGCAGATCTTTGTGAAAACCCTCACAGGAAAAACCATAACACTTGAGGTTGAGCCATCT 2630 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || |||| || || || ||||| || || ||||| || || Sbjct 2629 GATACTATTGAAAATGTTAAAACTAAGATCCAAGATAAGGAAGGCATCCCTCCTGATCAA 2570 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||||||||||||||| || || |||| |||||| | | || || ||| Sbjct 2569 CAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 2510 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||| ||||| || ||| |||| Sbjct 2509 ATCCAGAAGGAGTCCACGCTCCATTTAGT 2481 Score = 143 bits (158), Expect = 3e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || || || || ||||| || || | || || || | | Sbjct 3373 ATGCAAATTTTTGTCAAAACCCTCACAGGAAAGACCATCACATTGGAAGTCGAACCTTCT 3314 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| ||||||| || |||||||| ||||| || ||||| |||||||| Sbjct 3313 GATACCATTGAGAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCACCAGACCAA 3254 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||||||||| ||||| | || |||| ||||||| | | || || || Sbjct 3253 CAGAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACCTTGTCTGATTACAAC 3194 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 |||| || |||||||| |||||| Sbjct 3193 ATCCAGAAAGAATCCACACTTCAT 3170 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || |||||||| || || Sbjct 3601 ATGCAGATCTTCGTCAAGACACTCACAGGAAAGACCATAACCCTTGAGGTAGAACCATCA 3542 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | || ||||| || || || ||||| || |||||||||||||| Sbjct 3541 GATACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAA 3482 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||| ||||| | || |||| |||||| | | || || || Sbjct 3481 CAGAGGTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGATTACAAC 3422 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | || |||||||| |||||||| || || Sbjct 3421 ATTCAGAAGGAATCTACTCTTCACCTTGT 3393 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || ||| | || ||||| | | Sbjct 2005 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCCTCT 1946 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || || || || |||||||||||||| ||||| ||||| ||| Sbjct 1945 GACACAATTGAAAATGTAAAAGCAAAGATCCAGGACAAGGAGGGCATTCCACCAGATCAG 1886 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| ||||| | |||| || || Sbjct 1885 CAGAGACTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGTACATTGTCAGATTACAAC 1826 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || |||||||| || |||||| | ||| | | ||||| ||||| || Sbjct 1825 ATTCAGAAGGAATCTACCCTTCATTTGGTCCTTAGACTTCGTGGTGGCCA 1776 Score = 136 bits (150), Expect = 4e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || || || || ||||| || || | || || || || | Sbjct 2917 ATGCAGATATTTGTTAAAACCCTCACTGGAAAGACCATCACCTTGGAAGTAGAACCATCT 2858 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | || ||||| || || || ||||| || ||||||||||||||| Sbjct 2857 GACACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAG 2798 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||||||||| || || || |||| || || | ||||||| ||| Sbjct 2797 CAGAGGCTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTGTCAGACTACAAT 2738 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || |||||||| |||||||| Sbjct 2737 ATTCAGAAGGAATCTACTCTTCA 2715 Score = 129 bits (142), Expect = 6e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| ||||| || ||||| || || | || || || || | Sbjct 2233 ATGCAGATCTTCGTGAAGACACTTACTGGAAAGACCATCACATTGGAAGTAGAACCATCT 2174 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | || || || || || || ||||| || || || ||||||||| Sbjct 2173 GATACCATTGAAAATGTCAAAGCCAAGATCCAAGATAAGGAAGGTATCCCCCCAGACCAG 2114 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||||||||| | || |||| |||||| | | ||||| ||| Sbjct 2113 CAGAGATTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACTTTGTCTGACTACAAT 2054 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 | || |||||||| || || ||| Sbjct 2053 ATTCAGAAGGAATCTACACTCCAT 2030 >seq2408123 Length=1217 Score = 104 bits (114), Expect = 3e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| || |||||||| |||||||| || ||||| ||||| ||| || Sbjct 816 AATGCAGATCTTTGTGAAAACGCTTACTGGCAAGACCATCACTCTAGAGGTCGAGCCATC 757 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||||| |||| |||| | |||||||| ||||||||||| || || Sbjct 756 TGATACTATTGAAAATGTAAAGGCTAAGATTCAGGACAAAGAAGG 712 >seq2750648 Length=12224 Score = 98.7 bits (108), Expect = 1e-15 Identities = 171/247 (69%), Gaps = 9/247 (4%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 ||||||||||| || || || || || || || ||||| |||||| | || || || || Sbjct 10820 ATAATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTACTATAGAAGTAGAATCG 10879 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || || | || | ||| | || ||||| || ||||| || || |||||||| || Sbjct 10880 GGAGAGACAATAGAAAAACTTAAACAAAAAATACAAGACAAAGAAGGTATTCCTCCCGAT 10939 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGAT---CGTACCCTAGCAGAC 27579 || ||||| ||||||| || ||||| ||| | || ||| || ||| | | || Sbjct 10940 CAACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATAATAAATGTA---TTACTGAT 10996 Query 27580 TATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG---ACAA 27636 ||||| | ||||| ||||| || ||||| | || ||| | ||| | || || |||| Sbjct 10997 TATAACATTCAAAAAGAATCTACAATTCATTTGGTTTTGAGACTTAGAGGGGGGATACAA 11056 Query 27637 GTTTAAA 27643 || ||| Sbjct 11057 CTTAAAA 11063 >seq2645534 Length=2039 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 32045 GTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACG 32104 |||| || ||||| || ||||| | || ||| || ||||| | || ||||| || | Sbjct 197 GTGAGATCAAGGTTGCTCAGCTAGCTGGTGCCGTTGCTGAGCACTCTGCGTATCATCATG 256 Query 32105 GCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATA 32164 | || || | ||| |||||| ||||| | || || |||||||| ||| |||| | Sbjct 257 GTGAACAATCTTTAATGGGAACCATTATCAACTTGGCACAAAACTTTGTTGGTTCAAACA 316 Query 32165 ACCTGAACTTACT-CGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGAT 32223 || | ||||| || | | |||| ||| |||||||| || | || |||||||| ||| Sbjct 317 ACATCAACTTGCTGCAACCCAT-TGGTCAGTTTGGTACTAGACTTCAAGGTGGCAAAGAT 375 Query 32224 GCTGCGAGCTCCCGTTACATCTTCAC 32249 ||||| || | || ||||||||||| Sbjct 376 GCTGCAAGTCCTCGATACATCTTCAC 401 >seq2412204 Length=1224 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| || || ||||| |||||||| || ||||| ||||| ||| || Sbjct 402 AATGCAGATCTTTGTGAAAACACTTACTGGCAAGACCATCACTCTAGAGGTCGAGCCATC 461 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| |||| |||| | |||||||| ||||||||||| || || Sbjct 462 GGATACTATTGAAAATGTAAAGGCTAAGATTCAGGACAAAGAAGG 506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550700904237440