Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq2392612 105 8e-18 seq2211751 100 3e-16 seq1481831 87.8 2e-12 seq308612 87.8 2e-12 >seq2392612 Length=1189 Score = 105 bits (116), Expect = 8e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 22661 TTTTTCAAATATAAGTTGTGCTACTCTATCGCCCTTATTTACGTAAAATACATCCTTACT 22720 |||||| || || | ||| |||| |||||| ||||| ||||| | | | ||| || | Sbjct 791 TTTTTCTAAAATTAATTGGGCTATTCTATCACCCTTTTTTACATTATAATCATTATTGCC 732 Query 22721 AAAATTAAATAACAATA-TACCTATATTTCCCCTGTAATCTCTATCTATCACACCCGCGC 22779 ||| | || |||| |||| ||||||||| | ||||||||||| || |||||||| Sbjct 731 GTGATTGTA-AAGAATAATACCAATATTTCCCATATAATCTCTATCAATTACACCCGCAG 673 Query 22780 CTACATCGATAAAATGATTACATGCCAATCCCGATCTAGGAGATATTCTTCCATATAATC 22839 | |||| ||| ||||||| |||| || ||||||||| || | ||| || || | | Sbjct 672 CGACATTAATAGAATGATTGAATGCTAAACCCGATCTACTAGCCAATCTGCCGTAACACC 613 Query 22840 CTTCCGGTATATCTATTATAATATCAG 22866 | || || || |||| | ||||||| Sbjct 612 CATCGGGAATTAATATTCTGATATCAG 586 >seq2211751 Length=925 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 22661 TTTTTCAAATATAAGTTGTGCTACTCTATCGCCCTTATTTACGTAAAATACATCCTTACT 22720 |||||| || || | ||| |||| |||||| ||| | ||||| | | | ||| || | Sbjct 743 TTTTTCTAAAATTAATTGGGCTATTCTATCACCCCTTTTTACATTATAATCATTATTGCC 684 Query 22721 AAAATTAAATAACAATA-TACCTATATTTCCCCTGTAATCTCTATCTATCACACCCGCGC 22779 ||| | || |||| |||| ||||||||| | ||||||||||| || |||||||| Sbjct 683 GTGATTGTA-AAGAATAATACCAATATTTCCCATATAATCTCTATCAATTACACCCGCAG 625 Query 22780 CTACATCGATAAAATGATTACATGCCAATCCCGATCTAGGAGATATTCTTCCATATAATC 22839 | |||| ||| ||||||| |||| || ||||||||| || | ||| || || | | Sbjct 624 CGACATTAATAGAATGATTGAATGCTAAACCCGATCTACTAGCCAATCTGCCGTAACACC 565 Query 22840 CTTCCGGTATATCTATTATAATATCAG 22866 | || || || |||| | ||||||| Sbjct 564 CATCGGGAATTAATATTCTGATATCAG 538 >seq1481831 Length=512 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 22661 TTTTTCAAATATAAGTTGTGCTACTCTATCGCCCTTATTTACGTAAAATACATCCTTACT 22720 |||||| || || | ||| |||| |||||| ||| | ||||| | | | ||| | | Sbjct 370 TTTTTCTAAAATTAATTGGGCTATTCTATCACCCCTCTTTACATTATAATCATTATCGCC 311 Query 22721 AAAATTAAATAACAATA-TACCTATATTTCCCCTGTAATCTCTATCTATCACACCCGCGC 22779 ||| | || |||| |||| ||||||||| ||||||||||| || ||||||| Sbjct 310 GTGATTGTA-AAGAATAATACCAATATTTCCCAAATAATCTCTATCAATTACACCCGAAG 252 Query 22780 CTACATCGATAAAATGATTACATGCCAATCCCGATCTAGGAGATATTCTTCCATATAATC 22839 | |||| ||| ||||||| |||| || ||||||||| || | ||| || || | | Sbjct 251 CGACATTAATAGAATGATTGAATGCTAAACCCGATCTACTAGCCAATCTGCCGTAACACC 192 Query 22840 CTTCCGGTATATCTATTATAATATCAG 22866 | || || || |||| | ||||||| Sbjct 191 CATCGGGAATTAATATTCTGATATCAG 165 >seq308612 Length=332 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 22737 ATACCTATATTTCCCCTGTAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGA 22796 ||||| ||||||||| | ||||||||||| || |||||||| | |||| ||| ||||| Sbjct 42 ATACCAATATTTCCCATATAATCTCTATCAATTACACCCGCAGCGACATTAATAGAATGA 101 Query 22797 TTACATGCCAATCCCGATCTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATT 22856 || |||| || ||||||||| || | ||| || || | || || || || |||| Sbjct 102 TTGAATGCTAAACCCGATCTACTAGCCAATCTGCCGTAACACCCATCGGGAATTAATATT 161 Query 22857 ATAATATCAGTCATTACTAATT 22878 | ||||||| | || ||||| Sbjct 162 CTGATATCAG--AATATTAATT 181 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 22737 ATACCTATATTTCCCCTGTAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGA 22796 ||||| ||||||||| | ||||||||||| || |||||||| | |||| ||| ||||| Sbjct 291 ATACCAATATTTCCCATATAATCTCTATCAATTACACCCGCAGCGACATTAATAGAATGA 232 Query 22797 TTACATGCCAATCCCGATCTAGGAGATATTCTTCCATATAATCCTTCCGGTATATCTATT 22856 || |||| || ||||||||| || | ||| || || | || || || || |||| Sbjct 231 TTGAATGCTAAACCCGATCTACTAGCCAATCTGCCGTAACACCCATCGGGAATTAATATT 172 Query 22857 ATAATATCAGTCATTACTAATT 22878 | ||||||| | || ||||| Sbjct 171 CTGATATCAG--AATATTAATT 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582441091690880