Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2732657 102 5e-17 seq2442759 100 2e-16 seq2750648 98.7 6e-16 >seq2732657 Length=3626 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| || || ||||| |||||||| |||||||| | ||| ||| | ||||| Sbjct 1797 ACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGACAATGTACGCCCATCTTCC 1856 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || ||||| || | | ||| || || || || | ||||||||||| | Sbjct 1857 AGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGG 1916 Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 |||||| ||||| | ||||||||| | || ||||||| || || || || Sbjct 1917 ATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACTTCCAAAGTGATGGTCTTT 1976 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || ||||| || |||||||| Sbjct 1977 CCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | || |||||||| ||| |||||| || || || ||||| || Sbjct 2463 CCACCTCTGAGCCTGAGTACTAAATGGAGCGTGGACTCCTTCTGGATATTGTAATCAGAC 2522 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| || || ||||| ||||| || || | |||||| || || || Sbjct 2523 AATGTACGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCAGGAGGG 2582 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| |||||| |||||||| | ||| || || ||| || Sbjct 2583 ATGCCTTCCTTATCTTGGATCTTA-GTTTTAACATTTTCAATAGTATCAGATGGCTCAAC 2641 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||||| ||||| || || | ||||||||||| |||||||| Sbjct 2642 CTCAAGTGTTATGGTTTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 2689 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | || |||||||| || ||||| ||||| || || || || Sbjct 2235 CCACCTCTAAGCCTAAGAACTAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGAC 2294 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| || || || ||||| || | | ||| ||||| || || Sbjct 2295 AGAGTGCGACCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGAGGG 2354 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || ||||||||| |||||| |||| ||| |||||| ||||||| Sbjct 2355 ATACCTTCCTTGTCTTGAATCTTTGCCTTTACATTCTCAATGGTGTCTGAAGGCTCCACT 2414 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || ||||| || || | || ||||||||||| ||||| Sbjct 2415 TCTAGGGTAATTGTTTTTCCTGTAAGGGTCTTCACAAAAATTTGCAT 2461 >seq2442759 Length=1285 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| || || ||||| || ||||| |||||||| | ||| || | ||||| Sbjct 105 ACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGGCCATCTTCC 164 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || ||||| || || | ||| ||||| || || | |||||||| ||| | Sbjct 165 AGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGAATGCCCTCCTTATCTTGG 224 Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 |||||| |||| | || |||||| ||| || || | ||| || || || Sbjct 225 ATCTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTCTACCTCAAGGGTAATGGTCTTC 284 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || | || |||||||| |||||||||||| Sbjct 285 CCAGTGAGTGTCTTCACAAAGATCTGCATGTTG 317 >seq2750648 Length=12224 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | ||| |||||||| | || || ||||||||||||||||| | | Sbjct 11049 CCCCCTCTAAGTCTCAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGTA 10990 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | | | ||||| | |||||||||||| || ||||| |||||||| || || || Sbjct 10989 ATACATTTATTATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGA 10930 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || || |||||| || |||||||| | | ||||| ||| | || ||| Sbjct 10929 ATACCTTCTTTGTCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCTACT 10870 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || ||||| || | ||||| || || || ||||| Sbjct 10869 TCTATAGTAATTGTCTTACCAGTGAGTGTTTTTACGAATATTTGCAT 10823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 304178509683896