Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2750648 154 1e-32 seq2732657 127 2e-24 seq1400646 109 5e-19 seq2442759 104 2e-17 seq2745302 82.4 6e-11 >seq2750648 Length=12224 Score = 154 bits (170), Expect = 1e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| |||||||| || || || ||| | |||||| | ||||| ||| || Sbjct 10823 ATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTACTATAGAAGTAGAATCGGGA 10882 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | | ||||||||||| |||||||||||||| || || ||||||||| Sbjct 10883 GAGACAATAGAAAAACTTAAACAAAAAATACAAGACAAAGAAGGTATTCCTCCCGATCAA 10942 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| ||||| | |||||| |||||||| ||||| | | || | ||||| ||| Sbjct 10943 CAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATAATAAATGTATTACTGATTATAAC 11002 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||| || || || | |||||||||||| Sbjct 11003 ATTCAAAAAGAATCTACAATTCATTTGGTTTTG 11035 >seq2732657 Length=3626 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || ||| | || || | ||||| ||||| || Sbjct 3373 ATGCAAATTTTTGTCAAAACCCTCACAGGAAAGACCATCACATTGGAAGTCGAACCTTCT 3314 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| ||||| || || |||||||| ||||| || ||| Sbjct 3313 GATACCATTGAGAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCACCAGACCAA 3254 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || ||||| || |||||||| || ||| | || ||||||||| Sbjct 3253 CAGAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACCTTGTCTGATTACAAC 3194 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || | |||||||| | || ||| | ||||| || Sbjct 3193 ATCCAGAAAGAATCCACACTTCATTTGGTGCTTCGATTGAGAGGTGGTAT 3144 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || ||| | ||||| ||||| || Sbjct 2005 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCCTCT 1946 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||| || || ||||| || ||||| ||||| ||||| Sbjct 1945 GACACAATTGAAAATGTAAAAGCAAAGATCCAGGACAAGGAGGGCATTCCACCAGATCAG 1886 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || | || ||||||||| Sbjct 1885 CAGAGACTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGTACATTGTCAGATTACAAC 1826 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| ||||| || ||| | |||||||| Sbjct 1825 ATTCAGAAGGAATCTACCCTTCATTTGGT 1797 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || || ||||| || ||||| || Sbjct 3601 ATGCAGATCTTCGTCAAGACACTCACAGGAAAGACCATAACCCTTGAGGTAGAACCATCA 3542 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| || || ||||| || ||||| || || || || ||| Sbjct 3541 GATACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAA 3482 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || |||||||| || || | || ||||||||| Sbjct 3481 CAGAGGTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGATTACAAC 3422 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || | || | || | || ||| | ||||| || Sbjct 3421 ATTCAGAAGGAATCTACTCTTCACCTTGTACTCCGATTGAGAGGTGGTAT 3372 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || || || | ||||| || |||||||| || || Sbjct 2461 ATGCAAATTTTTGTGAAGACCCTTACAGGAAAAACAATTACCCTAGAAGTGGAGCCTTCA 2402 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||| ||||||||||| ||||| || || || || || Sbjct 2401 GACACCATTGAGAATGTAAAGGCAAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 2342 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || | ||||| || || | || || ||||| Sbjct 2341 CAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGATGGTCGCACTCTGTCTGACTACAAT 2282 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||| ||||| || || | ||||| ||| Sbjct 2281 ATTCAGAAGGAATCTACACTCCATTTAGTT 2252 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| || || || ||| | || || | ||||| ||||| || Sbjct 2917 ATGCAGATATTTGTTAAAACCCTCACTGGAAAGACCATCACCTTGGAAGTAGAACCATCT 2858 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || || ||||| || ||||| || || || || || Sbjct 2857 GACACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAG 2798 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| ||||||| | || | || || ||||| Sbjct 2797 CAGAGGCTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTGTCAGACTACAAT 2738 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || | || ||||| | | ||| | ||||| || Sbjct 2737 ATTCAGAAGGAATCTACTCTTCACTTGGTACTAAGATTGAGAGGTGGTAT 2688 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || ||| | || || ||||| || ||||| || Sbjct 3145 ATGCAGATCTTTGTGAAAACCCTCACAGGAAAGACCATCACACTTGAGGTTGAACCATCA 3086 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| || || ||||| || ||||| || || || || || Sbjct 3085 GATACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 3026 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || |||||| ||||||| | || | || || |||||| Sbjct 3025 CAAAGGCTGATCTTTGCAGGTAAACAACTGGAAGATGGCCGCACATTGTCTGACTACAAC 2966 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||| ||||| || || Sbjct 2965 ATTCAGAAGGAATCTAC 2949 >seq1400646 Length=492 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| |||||||| || || || ||| | |||| | | ||||| ||| || Sbjct 164 ATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTAATATAGAAGTAGAAGCGGGA 105 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 | || || | | |||||| |||| |||||||||| ||| || || ||||||||| Sbjct 104 AAGAAAATAGAAAAACTTAAACAACAAATACAAGACAAAGTAGGTATTCCTCCCGATCAA 45 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 ||||| ||||| | |||||| |||||||| ||||| Sbjct 44 CAGCGATTAATTTTCGCCGGTAAACAATTAGAAGA 10 >seq2442759 Length=1285 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || || ||| | ||||| ||||| || || || || Sbjct 314 CATGCAGATCTTTGTGAAGACACTCACTGGGAAGACCATTACCCTTGAGGTAGAGCCTTC 255 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || ||| || ||||| || || ||||| |||||||| || Sbjct 254 AGACACCATCGAAAATGTAAAGGCAAAGATCCAAGATAAGGAGGGCATTCCACCCGACCA 195 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | || || || || ||||||| | || | || |||||||| Sbjct 194 GCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACATTGTCAGATTACAA 135 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||| || ||||| || || | |||||||| Sbjct 134 CATCCAGAAGGAATCTACACTTCATTTGGT 105 >seq2745302 Length=5028 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 135647 GTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTG 135706 ||||| ||||||||||| | || ||| | |||||||| |||||| || || | Sbjct 3886 GTAGGATGTATGTGGTCGGTATGTGGTATCCACGATCAGGGATGGGGAGAACGGCCCATT 3827 Query 135707 TTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAA 135756 ||||||||||| || |||||||| || || ||||| | ||| |||||||| Sbjct 3826 TTTGGCAAGATACGTTATATGAATTACGAAGGTTGCAAAAGGAAATTTAA 3777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420341156717816