Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq2738736 104 2e-17 seq2739001 89.7 4e-13 seq2489781 84.2 2e-11 >seq2738736 Length=4073 Score = 104 bits (114), Expect = 2e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 || ||||||||||| || | | | || || || | || |||||||| || |||||| Sbjct 2016 TGGGCAATCATGTAGGTGAGAAGAGCATAACTAGCAATGTTGAAAGGAACTCCAAGACCC 1957 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGA 118665 || ||||||||||| ||||| | ||||||||||| || || || || |||||||||||| Sbjct 1956 ATATCTGCTGATCTTTGGTATAGCTGGCAAGAGAGTTCTCCATTAGCCACATAAAACTGA 1897 Query 118666 CTTATGATGTGACATGGAGGCA 118687 | | ||| |||||||||| Sbjct 1896 CACAGACAGTGGCATGGAGGCA 1875 >seq2739001 Length=4099 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/153 (75%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 118900 ACTTTTCTCTGAAATTCTTTTGACCCATTAGCATTCCAAATAGCAAC-TCCtttttttGC 118958 ||||||| | | ||||||||||| ||| ||| ||| ||| ||| ||||||| ||| Sbjct 2066 ACTTTTC-CAGGAATTCTTTTGATGAATTCCCATCCCATATATGAACATCCTTTTCTTGT 2008 Query 118959 CAGATCATTAGAGTTTGTAGAACCACTTAAAAACCAAAGAAGCTCCTCAACAACGCCTCT 119018 || || |||| ||||||||||| | | |||||||| ||||| || |||| |||| Sbjct 2007 -AGTTCTTTAGCATTTGTAGAACCCCGAATGAACCAAAGGAGCTCTTCTGCAACCCCTCG 1949 Query 119019 CCAAAAAACTGTTTTTGTTGTAAACAGTGGAAA 119051 |||||| || |||||| || | |||||||| Sbjct 1948 CCAAAATACCCGTTTTGTGGTGAGTAGTGGAAA 1916 >seq2489781 Length=1392 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/155 (74%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 118900 ACTTTTCTCTGAAATTCTTTTGACCCATTAGCATTCCAAATAGCAAC-TCCtttttttGC 118958 ||||||| | | ||||||||||| ||| ||| ||| ||| ||| ||||||| ||| Sbjct 213 ACTTTTC-CAGGAATTCTTTTGATGAATTCCCATCCCATATATGAACATCCTTTTCTTGT 155 Query 118959 CAGATCATTAGAGTTTGTAGAACCACTTAAAAACCAAAGAAGCTCCTCAACAACGCCTCT 119018 || || |||| ||||||||||| | | |||||||| ||||| || |||| |||| Sbjct 154 -AGTTCTTTAGCATTTGTAGAACCCCGAATGAACCAAAGGAGCTCTTCTGCAACCCCTCG 96 Query 119019 CCAAAAAACTGTTTTTGTTGTAAACAGTGGAAACT 119053 |||||| || |||||| || | || |||| || Sbjct 95 CCAAAATACCCGTTTTGTGGTGAGTAGAGGAAGCT 61 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 400581754377568