Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2750648 107 1e-18 >seq2750648 Length=12224 Score = 107 bits (118), Expect = 1e-18 Identities = 168/236 (71%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 27771 GCATCAACACA-ATAGTAA-AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATT 27828 ||| ||||||| ||||||| ||||||||| || || ||||| || ||||| || ||| Sbjct 10802 GCAACAACACATATAGTAATAATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATT 10861 Query 27829 ACAATTGATGTCGAAA--GCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACA 27886 || || || || ||| | | ||| || | || | | |||||||||||| |||| Sbjct 10862 ACTATAGAAGTAGAATCGGGAGAGACAATAGAAAAAC--TTAAACAAAAAATACAAGACA 10919 Query 27887 AAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACG 27946 |||||||| |||| || || || || |||||||| ||||| |||||||| || || Sbjct 10920 AAGAAGGTATTCCTCCCGATCAACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATA 10979 Query 27947 AACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 | | | | ||||| ||||| |||||||| || | |||||||||||| Sbjct 10980 ATAAATGTATTACTGATTATAACATTCAAAAAGAATCTACAATTCATTTGGTTTTG 11035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 343932361254024