Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2732657 179 8e-40 seq2442759 143 6e-29 seq2750648 95.1 3e-14 seq2412204 93.3 9e-14 seq2408123 93.3 9e-14 seq642385 93.3 9e-14 >seq2732657 Length=3626 Score = 179 bits (198), Expect = 8e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| ||||| | ||||| || || || || || ||||| ||||| | | || Sbjct 1784 ACGAAGTCTAAGGACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGACAATGT 1843 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||||||||||||||| ||||| || | || || || || |||| || Sbjct 1844 ACGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGAATGCC 1903 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| ||| || ||||| || ||||||||| |||||| || | Sbjct 1904 CTCCTTGTCCTGGATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACTTCCAA 1963 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| |||||||| ||||| ||||| || || | |||||| Sbjct 1964 AGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 ||||| || |||||||||||||| || || || || ||||| || || | | || | Sbjct 2927 AAGTCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAATGTGCG 2986 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||||| || || ||||| ||||| || | ||| ||||| || |||| ||||| Sbjct 2987 GCCATCTTCCAGTTGTTTACCTGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATACCTTC 3046 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| || |||||||| ||| || ||||| ||||| || || ||||||||| || || Sbjct 3047 CTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCAACCTCAAGTGT 3106 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||| ||||| || || ||||| | |||||| Sbjct 3107 GATGGTCTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 3145 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||| || || || || ||||| ||||| | | || | |||||| Sbjct 3390 AGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAATCAGACAATGTACGACCATCT 3449 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || || ||||| | | |||||||| ||||||| |||||||| || Sbjct 3450 TCCAACTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGAGGAATACCTTCCTTATCT 3509 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || ||||| ||||| || || ||| ||||| || || || ||| Sbjct 3510 TGGATCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCTACCTCAAGGGTTATGGTC 3569 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| || || | |||||| Sbjct 3570 TTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 3601 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 |||||| || | ||||||||| || || || || || || || || | | || | || Sbjct 2702 TCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGACAATGTGCGGCC 2761 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||||||| || || || ||||| || | || ||||| ||||||| |||||||| Sbjct 2762 ATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACCTTCCTT 2821 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || |||||||| ||| || ||||| ||||||||||| ||| || || | ||||| Sbjct 2822 ATCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCTACTTCCAAGGTGAT 2881 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| || || ||||| | |||||| Sbjct 2882 GGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 2917 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || |||||||| || ||||| || ||||| | | || | ||||||||||||||| Sbjct 2487 TGGAGCGTGGACTCCTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGC 2546 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || | | ||||| |||||||| | |||||||| || |||||||| Sbjct 2547 TTACCAGCAAAAATCAACCTCTGTTGATCAGGAGGGATGCCTTCCTTATCTTGGATCTTA 2606 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || ||||| || || ||||| |||||||| || || || || ||||| ||| Sbjct 2607 GTTTTAACATTTTCAATAGTATCAGATGGCTCAACCTCAAGTGTTATGGTTTTTCCTGTG 2666 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| | |||||| Sbjct 2667 AGGGTTTTCACAAAGATCTGCAT 2689 Score = 116 bits (128), Expect = 8e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 ||| || || || | || || || || || || || || || || || | || || | Sbjct 2243 AAGCCTAAGAACTAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGACAGAGTGCG 2302 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||| |||||||||||||| ||||| || | || ||||| ||||| | ||||| Sbjct 2303 ACCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGAGGGATACCTTC 2362 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 |||||| || |||||| || || || || |||||||| || || || || || || Sbjct 2363 CTTGTCTTGAATCTTTGCCTTTACATTCTCAATGGTGTCTGAAGGCTCCACTTCTAGGGT 2422 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || ||||| ||||| | ||||| Sbjct 2423 AATTGTTTTTCCTGTAAGGGTCTTCACAAAAATTTGCAT 2461 >seq2442759 Length=1285 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | ||||| || || || || |||||||| ||||| | | || | || Sbjct 98 TCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGGCC 157 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||||||||||| || || ||||| | | || ||||| || |||| || ||||| Sbjct 158 ATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGAATGCCCTCCTT 217 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || ||||||||| || || |||||||||||||| || || ||||| || || || Sbjct 218 ATCTTGGATCTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTCTACCTCAAGGGTAAT 277 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || ||||| ||||| ||||| | |||||| || Sbjct 278 GGTCTTCCCAGTGAGTGTCTTCACAAAGATCTGCATGTT 316 >seq2750648 Length=12224 Score = 95.1 bits (104), Expect = 3e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | || | |||| || || |||||||| ||||||||||| | || | Sbjct 11041 AAGTCTCAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGTAATACATTT 10982 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||| | || || || ||||| || | || ||||| || ||||||| ||||| Sbjct 10981 ATTATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTTC 10922 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||| || || |||||||| | ||||| || || || ||| || || | ||| Sbjct 10921 TTTGTCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCTACTTCTATAGT 10862 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || ||||| || ||||| || | |||||| Sbjct 10861 AATTGTCTTACCAGTGAGTGTTTTTACGAATATTTGCATT 10822 >seq2412204 Length=1224 Score = 93.3 bits (102), Expect = 9e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| |||||||| || |||| || || || ||||| |||||||||||||| || |||| Sbjct 838 CTTTCTGGATGTTGTAGTCCGAGAGTGTTCTCCCATCCTCCAGCTGCTTGCCAGCAAAGA 779 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||| |||||||| ||||| |||| |||| Sbjct 778 TAAGACGTTGTTGATCAGGGGGAATTCCT 750 >seq2408123 Length=1217 Score = 93.3 bits (102), Expect = 9e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| |||||||| || |||| || || | ||||| |||||||||||||| ||||||| Sbjct 380 CTTTCTGGATGTTGTAGTCCGAGAGTGTTCGCCCATCCTCCAGCTGCTTGCCAGCGAAGA 439 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||| |||||||| ||||| |||| |||| Sbjct 440 TAAGACGTTGTTGATCAGGGGGAATTCCT 468 >seq642385 Length=370 Score = 93.3 bits (102), Expect = 9e-14 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | || || || || || || |||||||| || || | | || | || Sbjct 51 TCTAAGGACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTGACAATGTGCGGCC 110 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||||||||||| || || ||||| | | |||||||| || || | |||||||| Sbjct 111 ATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGGGGGATCCCTTCCTT 170 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG----AGAG 211074 || |||||||| ||||| |||| || | ||| || | | |||| || | Sbjct 171 ATCTTGGATCTTGGCCTTCACAATTTCAATTGAGTCTGA----TGGATCTCGTACAAGCG 226 Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | | |||||||| || || ||||| || || | |||||| Sbjct 227 TAAGGGTCTTTCCTGTTAGTGTCTTGACGAAGATCTGCAT 266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1118299429385880