Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2750648 125 5e-24 seq2732657 120 2e-22 seq2605843 91.5 1e-13 seq1400646 84.2 1e-11 >seq2750648 Length=12224 Score = 125 bits (138), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||| ||||| || || || || ||| | ||||| || || Sbjct 10822 AATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTACTATAGAAGTAGAATCGGG 10881 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | | ||||||||||| |||||||||||| | || || ||||| Sbjct 10882 AGAGACAATAGAAAAACTTAAACAAAAAATACAAGACAAAGAAGGTATTCCTCCCGATCA 10941 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAG---ACGAACGCACTTTAGGCGATTA 23786 |||||| ||||| || ||||| |||||| | |||| | || | | ||| ||||| Sbjct 10942 ACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATAATAAATGTA--TTA-CTGATTA 10998 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| |||||||| || ||| | ||||| ||||| || Sbjct 10999 TAACATTCAAAAAGAATCTACAATTCATTTGGTTTTGAG 11037 >seq2732657 Length=3626 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| ||||| || |||||| | |||||||| || | Sbjct 2005 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCCTCT 1946 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| ||||| ||| || ||||| || || | || |||||||| Sbjct 1945 GACACAATTGAAAATGTAAAAGCAAAGATCCAGGACAAGGAGGGCATTCCACCAGATCAG 1886 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || |||||||| | || || || ||||||||| Sbjct 1885 CAGAGACTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGTACATTGTCAGATTACAAC 1826 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || || || | ||||| || Sbjct 1825 ATTCAGAAGGAATCTACCCTTCATTTGGT 1797 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| |||||||| || || || || ||||| | | Sbjct 2689 ATGCAGATCTTTGTGAAAACCCTCACAGGAAAAACCATAACACTTGAGGTTGAGCCATCT 2630 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| ||| |||| ||||||| || || || || ||||| | || || ||||| Sbjct 2629 GATACTATTGAAAATGTTAAAAC-TAAGATCCAAGATAAGGAAGGCATCCCTCCTGATCA 2571 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || ||||| || || || |||||||| | || || || |||||||| Sbjct 2570 ACAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAA 2511 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || |||||||| | |||||||| | ||| | |||| || Sbjct 2510 TATCCAGAAGGAGTCCACGCTCCATTTAGTACTCAGGCTCAGAGGTGG 2463 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||||||||| ||||| || ||||| | ||||| || | | Sbjct 3373 ATGCAAATTTTTGTCAAAACCCTCACAGGAAAGACCATCACATTGGAAGTCGAACCTTCT 3314 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || |||| | || || || ||||| | || ||||| || Sbjct 3313 GATACCATTGAGAATGTGAAGGCAAAGA-TTCAGGATAAGGAAGGCATTCCACCAGACCA 3255 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || ||||| ||||| || ||||||| | || || || |||||||| Sbjct 3254 ACAGAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACCTTGTCTGATTACAA 3195 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || ||||| |||||| | ||||| || | | ||| |||| || Sbjct 3194 CATCCAGAAAGAATCCACACTTCATTTGGTGCTTCGATTGAGAGGTGG 3147 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || |||||||||||||| ||||| || ||||| | ||||| || | | Sbjct 2917 ATGCAGATATTTGTTAAAACCCTCACTGGAAAGACCATCACCTTGGAAGTAGAACCATCT 2858 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| || || || || |||||| | || ||||| || Sbjct 2857 GACACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAG 2798 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || ||||| |||||||| | ||||| || || ||||| Sbjct 2797 CAGAGGCTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTGTCAGACTACAAT 2738 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || | || || || |||| ||| |||| || Sbjct 2737 ATTCAGAAGGAATCTACTCTTCACTTGGTACTAAGATTGAGAGGTGG 2691 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| ||||| || ||||| || || ||||| | | Sbjct 3145 ATGCAGATCTTTGTGAAAACCCTCACAGGAAAGACCATCACACTTGAGGTTGAACCATCA 3086 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | ||| || || || || |||||| | || ||||| || Sbjct 3085 GATACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 3026 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| || |||||||||||||| | ||||| || || |||||| Sbjct 3025 CAAAGGCTGATCTTTGCAGGTAAACAACTGGAAGATGGCCGCACATTGTCTGACTACAAC 2966 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 2965 ATTCAGAAGGAATCTAC 2949 >seq2605843 Length=1800 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||| | ||||| || || || || | || || | |||| Sbjct 637 ATGCAAATATTCGTCAAGACCTTAACGGGCAAGACCATAACCTTAGACGTCAATTCCAAC 578 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| || | | | | || || ||| || | ||| || |||||||| ||||| Sbjct 577 GACACTATTCAGACAGTGAAGGAATTTATTCAAGATAGAGAGGGCGTACCGCCCAATCAA 518 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | |||||||| | || ||||||||||||||||| ||| | || ||||| Sbjct 517 CAGAGACTAATATTTTCGGGGAAACAACTGGAAGACGACAAAACTCTTTTAGACTACAAT 458 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | || ||||| ||| || || | |||||| | ||| |||| ||| Sbjct 457 GTCCAGAAAGAAAGCACTTTGCACCTCGTTTTACGCTTGAGAGGGGGA 410 >seq1400646 Length=492 Score = 84.2 bits (92), Expect = 1e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||| ||||| || || || || | | | ||||| || | Sbjct 165 AATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTAATATAGAAGTAGAAGCGGG 106 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 | | | |||| | | |||||| |||| ||||||| |||| | || || ||||| Sbjct 105 AAAGAAAATAGAAAAACTTAAACAACAAATACAAGACAAAGTAGGTATTCCTCCCGATCA 46 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 |||||| ||||| || ||||| |||||| | ||||| Sbjct 45 ACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 326678063921696