Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2732657 138 3e-27 seq2442759 134 3e-26 seq642385 116 9e-21 seq231505 111 4e-19 seq2750648 109 1e-18 seq2179407 102 2e-16 seq1093497 102 2e-16 seq2646679 95.1 3e-14 seq2605843 93.3 1e-13 >seq2732657 Length=3626 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | ||| ||||| ||||| || || | |||||| || | ||| || | || Sbjct 2702 TCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGACAATGTGCGGCC 2761 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| ||||| || ||||| ||||| || | || ||||| || |||||||||||||| Sbjct 2762 ATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACCTTCCTT 2821 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| || ||| ||| |||||||| || | ||| || || || ||||| Sbjct 2822 ATCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCTACTTCCAAGGTGAT 2881 Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698 ||||| || || | ||||| Sbjct 2882 GGTCTTTCCAGTGAGGGTTTT 2902 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||||| || |||||||| ||||| ||||| || || | ||||| || | ||| || | Sbjct 2927 AAGTCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAATGTGCG 2986 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| || || || || || ||||| || | ||| ||||| || ||||||||||| Sbjct 2987 GCCATCTTCCAGTTGTTTACCTGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATACCTTC 3046 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||| ||||||||||| || ||| ||| ||||| ||||| | ||| || || | || Sbjct 3047 CTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCAACCTCAAGTGT 3106 Query 225675 GATCGTCTTGCCCGTCAAAGTTTT 225698 ||| ||||| || || | ||||| Sbjct 3107 GATGGTCTTTCCTGTGAGGGTTTT 3130 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| ||||| ||||| || || | |||||||| | ||| || | |||||| Sbjct 3390 AGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAATCAGACAATGTACGACCATCT 3449 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| ||||| ||||| | | |||||||| || |||||||||||||| ||| Sbjct 3450 TCCAACTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGAGGAATACCTTCCTTATCT 3509 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || ||| ||| ||||| ||||| | ||| || || | || || ||| Sbjct 3510 TGGATCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCTACCTCAAGGGTTATGGTC 3569 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | ||||| Sbjct 3570 TTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 3601 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || ||||||||||| |||| |||||||| | ||| || | |||||||| | |||| Sbjct 3171 TGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAGGTACGACCATCTTCCAACTGC 3230 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| || || | | |||||||| || ||||| |||||||| || || |||||| Sbjct 3231 TTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGAATGCCTTCCTTATCCTGAATCTTT 3290 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| || ||||| || || | ||| || || || ||||| ||||| || || Sbjct 3291 GCCTTCACATTCTCAATGGTATCAGAAGGTTCGACTTCCAATGTGATGGTCTTTCCTGTG 3350 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | ||||| | || | |||||| Sbjct 3351 AGGGTTTTGACAAAAATTTGCAT 3373 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| || || || | ||||| || ||||| || || | |||||| || | |||||| | Sbjct 2015 AAGCCTGAGAACCAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGACAAAGTACG 2074 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| | |||||| ||||| ||||| | || || ||||| || || |||||||| Sbjct 2075 ACCATCTTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTC 2134 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||| ||||||||||| || ||| ||| ||||| || || | ||| || || || || Sbjct 2135 CTTATCTTGGATCTTGGCTTTGACATTTTCAATGGTATCAGATGGTTCTACTTCCAATGT 2194 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||| || || | || || | ||| | ||||| Sbjct 2195 GATGGTCTTTCCAGTAAGTGTCTTCACGAAGATCTGCAT 2233 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| || || || | ||||| || ||||| || || | |||||| || | || ||| | Sbjct 2243 AAGCCTAAGAACTAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGACAGAGTGCG 2302 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| |||||||| || || ||||| || | || ||||| || || |||||||| Sbjct 2303 ACCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGAGGGATACCTTC 2362 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||||||| |||||| ||| ||| || ||||||||||| | ||||| |||| || Sbjct 2363 CTTGTCTTGAATCTTTGCCTTTACATTCTCAATGGTGTCTGAAGGCTCCACTTCTAGGGT 2422 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || | || || | || | |||||| Sbjct 2423 AATTGTTTTTCCTGTAAGGGTCTTCACAAAAATTTGCAT 2461 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| ||||| || || |||| ||||||||| | ||| || | |||||||| |||||| Sbjct 2487 TGGAGCGTGGACTCCTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGC 2546 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| || || | | ||||| || || || || |||||||| ||||||||||| Sbjct 2547 TTACCAGCAAAAATCAACCTCTGTTGATCAGGAGGGATGCCTTCCTTATCTTGGATCTTA 2606 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || ||| ||| || || || || | || || || | || || || || || || Sbjct 2607 GTTTTAACATTTTCAATAGTATCAGATGGCTCAACCTCAAGTGTTATGGTTTTTCCTGTG 2666 Query 225691 AAAGTTTT 225698 | ||||| Sbjct 2667 AGGGTTTT 2674 >seq2442759 Length=1285 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| ||||| | || || || ||||| || |||| |||||||| | ||| || | || Sbjct 98 TCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGGCC 157 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| |||||||| ||||| ||||| | | || |||||||| ||||| || ||||| Sbjct 158 ATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGAATGCCCTCCTT 217 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| ||||||||||||||| | || || || | || || Sbjct 218 ATCTTGGATCTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTCTACCTCAAGGGTAAT 277 Query 225678 CGTCTTGCCCGT 225689 ||||| || || Sbjct 278 GGTCTTCCCAGT 289 >seq642385 Length=370 Score = 116 bits (128), Expect = 9e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| ||||| | ||||| || ||||| || |||| ||||| || | ||| || | || Sbjct 51 TCTAAGGACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTGACAATGTGCGGCC 110 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| |||||||| ||||| ||||| | | |||||||| || || || |||||||| Sbjct 111 ATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGGGGGATCCCTTCCTT 170 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGA 225656 ||||||||||| ||||||| ||| || | |||||| Sbjct 171 ATCTTGGATCTTGGCCTTCACAATTTCAATTGAGTCTGA 209 >seq231505 Length=323 Score = 111 bits (122), Expect = 4e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | || || || ||| | ||||| ||||| ||||| || ||||| ||| | || || Sbjct 216 CAATTATATAATGTAATTGTAACGGCTCATGCTTTTGTAATAATTTTTTTTATAGTAATA 157 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || || | || || || || ||||||||||| ||||| ||||| | || || ||||| Sbjct 156 CCAATTTTAATTGGAGGGTTTGGAAATTGATTAGTTCCATTAATATTAGGGGCACCTGAC 97 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || || ||||| | | || ||| | || ||||||||| |||| ||||| ||||| Sbjct 96 ATAGCATTTCCTCGAATAAATAATTTGAGATTTTGATTATTACCTCCTTCTTTATT 41 >seq2750648 Length=12224 Score = 109 bits (120), Expect = 1e-18 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||||| || | || | || ||||||||||| | || ||||| | | | | | Sbjct 11041 AAGTCTCAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGTAATACATTT 10982 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| || || || ||||| || | ||| ||||| ||||| ||||||||||| Sbjct 10981 ATTATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTTC 10922 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||||| || ||||| || | ||| || || ||| | ||| || |||| || Sbjct 10921 TTTGTCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCTACTTCTATAGT 10862 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || ||||| || || | ||||||| ||| | ||||||| Sbjct 10861 AATTGTCTTACCAGTGAGTGTTTTTACGAATATTTGCATT 10822 >seq2179407 Length=888 Score = 102 bits (112), Expect = 2e-16 Identities = 106/138 (77%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || ||| ||||||| ||||| ||||| || ||||||||||||| |||||||||| Sbjct 250 ATGTCAAGGCCTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCT 309 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG- 7843 | | | | |||||| || |||||||||||||||||||| |||| | | |||| || Sbjct 310 TGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGT 369 Query 7844 AATATTTACGCGTTAGCT 7861 | || | ||||||||| Sbjct 370 CAACTTAATGCGTTAGCT 387 >seq1093497 Length=432 Score = 102 bits (112), Expect = 2e-16 Identities = 79/94 (84%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| ||||||||||| |||||||||||||| | || ||||| ||||| || || Sbjct 152 TTCAGGATGTCCAAAAAATCAAAATAAATGTTGATATAAAATTGGATCCCCTCCTCCAGA 93 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCA 370765 |||||||||||| |||||| ||||| | |||| Sbjct 92 TGGATCAAAAAAAGAAGTATTTAAATTACGATCA 59 >seq2646679 Length=2048 Score = 95.1 bits (104), Expect = 3e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || || ||||||||||| || || ||||| || || ||||||||||| |||||||| Sbjct 466 GAAGATCTGGCCATCAGTAATGGAAATGACATTGGTGGGAATATAAGCAGACACATCACC 407 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 || || ||||| | || || ||||| || || || ||||||||| |||| ||| Sbjct 406 AGCCTGGGTTTCAATGACTGGCAAGGCAGTGAGGGAGCCACCACCATTGTTTTCATT 350 >seq2605843 Length=1800 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || ||||| | |||| |||||| ||||||||||| || | |||| | | ||||| Sbjct 429 ACGAGGTGCAAAGTGCTTTCTTTCTGGACATTGTAGTCTAAAAGAGTTTTGTCGTCTTCC 488 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 || || ||||| | || || |||| ||||| | |||||| | || || | ||||| Sbjct 489 AGTTGTTTCCCCGAAAATATTAGTCTCTGTTGATTGGGCGGTACGCCCTCTCTATCTTGA 548 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 || || |||||| | | || ||||| || | |||||||| || || |||||| Sbjct 549 ATAAATTCCTTCACTGTCTGAATAGTGTCGTTGGAATTGACGTCTAAGGTTATGGTCTTG 608 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || | ||| | |||||| Sbjct 609 CCCGTTAAGGTCTTGACGAATATTTGCAT 637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150502229634128