Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2732095 250 2e-61 >seq2732095 Length=3591 Score = 250 bits (276), Expect = 2e-61 Identities = 525/780 (67%), Gaps = 2/780 (0%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||| ||| |||||||||| ||| ||||| |||||| ||||| || ||||| || || | Sbjct 1782 AACTCCACATTTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCCTCAAG 1723 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 || || |||||||| || ||||| ||||| ||| |||||| | || ||||| ||| Sbjct 1722 AGATATGTTTTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACAGCCTAG 1663 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | ||||| | || || || |||||||| || || || ||||| || | ||||| || Sbjct 1662 CTCCACAAGAAGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAGTTCAT 1603 Query 4427 TCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486 ||||| | | ||||| || || | || || || |||||||| || | ||||| || Sbjct 1602 ACCAATGAGATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACGGCATC 1543 Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAA 4546 || ||| | | | | || | || || ||||| || | |||| | Sbjct 1542 ATCAATGATAGACTGAACATGCTGTTGACTAGGCTTGTTTACCAAATGCTTGAACATGAG 1483 Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| ||||| ||| || | |||||| || ||| || | ||| || ||| || | Sbjct 1482 ACAGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAAGGTAAG 1423 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 || ||||| | || | || || |||||||| || || ||||| || || ||||| Sbjct 1422 ACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGCTGAAGAA 1363 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGG-ACCCGAACGAGCTGGCTTTGTCTT 4725 || ||||| || || ||||| || | | || | | ||| ||| | || | Sbjct 1362 AATACCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGT-TTCATGGG 1304 Query 4726 TAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGT 4785 ||||||| | | ||||||| ||| || || || || || || | || | | || | Sbjct 1303 CAATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAACGGCAT 1244 Query 4786 TAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 | || | | || ||| ||| | |||| || || |||| || |||| || |||| Sbjct 1243 TGAACAGTCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAACTGTACA 1184 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 ||||| || |||||||| || ||||| || || || ||||||||||| ||||||| | Sbjct 1183 TTTCACTGTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTTCTGGAA 1124 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 |||||||||| | || ||||| || || | ||||| || || || || ||| || | Sbjct 1123 CTTGAACTTCTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAGAAGCAG 1064 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGT 5025 | ||||| |||| ||||| || || || | || ||| ||||||||| | ||||| Sbjct 1063 CGAAAAATGCCAGCACATGGGAAATGAAATGTCTCTCCTCATCCTTAAGTTTATCCCAGT 1004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412733060027096