Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2732095 306 5e-78 seq2203840 100 4e-16 seq2601243 91.5 2e-13 seq2191123 91.5 2e-13 seq2541974 87.8 2e-12 >seq2732095 Length=3591 Score = 306 bits (338), Expect = 5e-78 Identities = 542/788 (69%), Gaps = 7/788 (1%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||||||||| |||||| || || || || | || || || || || ||||| || Sbjct 1787 GACATAACTCCACATTTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCC 1728 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAAT 47954 || | ||||| |||||||| || ||||||||||| ||||||| |||| || | | | Sbjct 1727 TCAAGAGATATGTTTTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACAG 1668 Query 47955 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAA 48014 |||| || || || | ||||||||| ||||| || ||| |||| | |||| Sbjct 1667 CCTAGCTCCACAAGAAGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAG 1608 Query 48015 TTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACA 48074 ||||| || || || || || || ||||| || || | || |||||||| || |||| Sbjct 1607 TTCATACCAATGAGATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACG 1548 Query 48075 GCATCCACTATTATCGATGTTACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAA 48132 ||||| | || || || || | | ||| || || ||| |||||| || | Sbjct 1547 GCATCATCAATGATAGACTGAACATGCTGTTGACTAGGCTTGTTTAC--CAAATGCTTGA 1490 Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 |||| | ||| ||||| ||| |||||||||||||| || |||||||| || || Sbjct 1489 ACATGAGACAGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAA 1430 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 | || ||||| ||||| || |||||||| ||||||||||| || || || || || || Sbjct 1429 AGGTAAGACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGC 1370 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC---TT 48309 ||||| || ||||| || || ||||| || | | | || | ||||| || || Sbjct 1369 TGAAGAAAATACCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTT 1310 Query 48310 CGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTA 48369 | | | ||||| | | ||||| ||||||||||| || |||||||||| || || | Sbjct 1309 CATGGGCAATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAA 1250 Query 48370 TAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGAC 48429 ||||| || || |||| ||| | ||| | | ||| || | || | | || Sbjct 1249 CGGCATTGAACAGTCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAAC 1190 Query 48430 TATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTT 48489 | |||||||| ||| |||||||| ||||| || || || || ||||| ||||| |||| Sbjct 1189 TGTACATTTCACTGTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTT 1130 Query 48490 CTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCAC 48549 ||| | || || || || |||| || | | ||| ||||| || || |||||| Sbjct 1129 CTGGAACTTGAACTTCTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAG 1070 Query 48550 TAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTAT 48609 |||||| |||||||| | ||||| ||| |||| | | || | | ||||||| Sbjct 1069 AAGCAGCGAAAAATGCCAGCACATGGGAAATGAAATGTCTCTCCTCATCCTTAAGTTTAT 1010 Query 48610 TCCAGTCA 48617 ||||||| Sbjct 1009 CCCAGTCA 1002 >seq2203840 Length=915 Score = 100 bits (110), Expect = 4e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 |||| ||| ||| ||||||||||| || ||||| |||||||| ||||| ||||| | | Sbjct 747 CACTGAATGTTTTCTTTGTTTCCTTATGGAGATTCGATACAGCAATTCTCGCAGCCAAGA 688 Query 78802 TAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTA 78861 |||||||||||||| | ||||| ||| || | ||||||| || | |||||| Sbjct 687 CGGCATAATCAGGATGCTTGGTAGTCATAGTAGCGGAGGTTTCTGCAGCCAGGTTATCTA 628 Query 78862 ACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTT 78904 |||| | ||| || || ||| || || || | |||||| || Sbjct 627 ACTCCACAGTGGTCACACCAGAGTAAAGGCCATTAATAACCTT 585 >seq2601243 Length=1778 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/201 (70%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 78183 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAA 78242 ||||| |||||||| || | ||| || | || || ||||| |||||||| ||||| | | Sbjct 437 GTGTTGTTATAAACCCTAAGCATAGGCACAAGGCCATTAGAAGTTCCATTCGTTCCTGCA 378 Query 78243 ATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCAT 78298 ||||||||||| | | |||||| | || | || || || || || || Sbjct 377 ATATAACTTCCCATAGATCGAATA----CAGTGCACATTCAGTCCAATGCCACCAGCAGA 322 Query 78299 CTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCAT 78358 |||||| || ||||| || | || | || || || || || || || ||||||||| | Sbjct 321 CTTAGAAATGAGAGCACACTGCTTGAGGGTGTCATAAATGCCTTCAATGCTGTCATCCTT 262 Query 78359 CATGTTAAGAAGAAAACAGCT 78379 |||| |||| | |||||||| Sbjct 261 CATGGTAAGCAAGAAACAGCT 241 >seq2191123 Length=901 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/201 (70%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 78183 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAA 78242 ||||| |||||||| || | ||| || | || || ||||| |||||||| ||||| | | Sbjct 522 GTGTTGTTATAAACCCTAAGCATAGGCACAAGGCCATTAGAAGTTCCATTCGTTCCTGCA 581 Query 78243 ATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCAT 78298 ||||||||||| | | |||||| | || | || || || || || || Sbjct 582 ATATAACTTCCCATGGATCGAATA----CAGTGCACATTCAGTCCAATGCCACCAGCAGA 637 Query 78299 CTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCAT 78358 |||||| || |||||||| | || | || || || || || || || ||||||||| | Sbjct 638 CTTAGAAATGAGAGCGCACTGCTTGAGGGTGTCATAAATGCCTTCAATGCTGTCATCCTT 697 Query 78359 CATGTTAAGAAGAAAACAGCT 78379 |||| | || | |||||||| Sbjct 698 CATGGTTAGCAAGAAACAGCT 718 >seq2541974 Length=1541 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 || ||||||||||| |||||||| | |||| ||||| | |||| ||||| ||||| Sbjct 974 CCTGGGCATTCATTGGGGCACATGAGACACCATTCACCGTTGTCCTCGACTCGCTTCATG 915 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 || |||||||| ||||| |||||| ||||| || || | ||| ||||| || Sbjct 914 AAAAGATCAGGAATCCACAGAGCATAGAATAGGTCACGAGCTCTTTGTTCATC 862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670783377447680