Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2732095 313 3e-80 seq2601243 102 1e-16 seq2191123 98.7 1e-15 >seq2732095 Length=3591 Score = 313 bits (346), Expect = 3e-80 Identities = 548/792 (69%), Gaps = 13/792 (2%) Strand=Plus/Minus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||||||||| ||||||||| || ||||| | || || || || || ||||| || Sbjct 1788 TGACATAACTCCACATTTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACC 1729 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAA 46442 || | ||||| |||||||| || ||||| ||||| |||| |||| || | | | Sbjct 1728 CTCAAGAGATATGTTTTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACA 1669 Query 46443 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACA 46502 |||| || || || | ||||||||| ||||| || || |||| | |||| Sbjct 1668 GCCTAGCTCCACAAGAAGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACA 1609 Query 46503 ATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGAC 46562 ||||| || ||||| ||||| || ||||| || || | || ||||||||||| |||| Sbjct 1608 GTTCATACCAATGAGATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGAC 1549 Query 46563 AGCATCCGATATTATCGA-TGT---TACTGTTTCCTCACTTGGTGGATGCATCAAATGTT 46618 ||||| || || || || | ||||| ||| || | | |||||| | Sbjct 1548 GGCATCATCAATGATAGACTGAACATGCTGTTG----ACTAGGCTTGTTTACCAAATGCT 1493 Query 46619 TAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAG 46678 | ||||| | ||| ||||| ||| ||||| |||||||| || |||||||| || Sbjct 1492 TGAACATGAGACAGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGC 1433 Query 46679 AAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATC 46738 ||| || || |||||||| || ||||| || ||||||||||| || || || || || | Sbjct 1432 TAAAGGTAAGACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAAC 1373 Query 46739 CAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCAT 46798 | ||||| || ||||| ||||| || || || | | | || | ||||| ||| Sbjct 1372 CGCTGAAGAAAATACCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAG 1313 Query 46799 CATTATG---AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTT 46855 | ||| |||||| || ||||||| |||||||| || || |||||||||| || | Sbjct 1312 TTTCATGGGCAATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCT 1253 Query 46856 CTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAA 46915 | | ||||| || || |||| ||| ||| ||| | | || || | || | | Sbjct 1252 CAACGGCATTGAACAGTCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTA 1193 Query 46916 GACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTG 46975 ||| |||||||| || || ||||| || || || || || || ||||| ||||||| Sbjct 1192 AACTGTACATTTCACTGTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTG 1133 Query 46976 CTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCA 47034 |||| | || || || ||| || |||| || ||||| ||| ||||| || || ||| Sbjct 1132 CTTCTGGAACTTGAACTTCTTGGCAGAATCTCTC-GACAAGATTTTCATTAACAATCCCA 1074 Query 47035 TCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT 47094 ||| |||||| |||||||||| ||||| ||| |||| | | || || | ||| Sbjct 1073 TCAGAAGCAGCGAAAAATGCCAGCACATGGGAAATGAAATGTCTCTCCTCATCCTTAAGT 1014 Query 47095 TTATTCCAGTCA 47106 |||| ||||||| Sbjct 1013 TTATCCCAGTCA 1002 >seq2601243 Length=1778 Score = 102 bits (112), Expect = 1e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 76778 GTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAA 76837 ||||| |||||||| || | ||| || | || ||| ||||| || ||||| ||||| | | Sbjct 437 GTGTTGTTATAAACCCTAAGCATAGGCACAAGGCCATTAGAAGTTCCATTCGTTCCTGCA 378 Query 76838 ATATAACTTCCACAT-GCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTT 76896 ||||||||||| ||| | |||||| | | || || || || || || || Sbjct 377 ATATAACTTCC-CATAGATCGAATACAGTGCACATTCAGTCCAATGCCACCAGCAGACTT 319 Query 76897 AGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT 76956 ||| || |||||||| | || | |||||||| ||||| || || || |||||| |||| Sbjct 318 AGAAATGAGAGCACACTGCTTGAGGGTGTCATAAATGCCTTCAATGCTGTCATCCTTCAT 259 Query 76957 GTTAAGAAGAAAACAGCT 76974 | |||| | |||||||| Sbjct 258 GGTAAGCAAGAAACAGCT 241 >seq2191123 Length=901 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 76778 GTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAA 76837 ||||| |||||||| || | ||| || | || ||| ||||| || ||||| ||||| | | Sbjct 522 GTGTTGTTATAAACCCTAAGCATAGGCACAAGGCCATTAGAAGTTCCATTCGTTCCTGCA 581 Query 76838 ATATAACTTCCACATGCA-CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTT 76896 ||||||||||| |||| | |||||| | | || || || || || || || Sbjct 582 ATATAACTTCC-CATGGATCGAATACAGTGCACATTCAGTCCAATGCCACCAGCAGACTT 640 Query 76897 AGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT 76956 ||| || ||||| || | || | |||||||| ||||| || || || |||||| |||| Sbjct 641 AGAAATGAGAGCGCACTGCTTGAGGGTGTCATAAATGCCTTCAATGCTGTCATCCTTCAT 700 Query 76957 GTTAAGAAGAAAACAGCT 76974 | | || | |||||||| Sbjct 701 GGTTAGCAAGAAACAGCT 718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 688420934883840