Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2442759 150 4e-31 seq2732657 134 3e-26 seq642385 107 4e-18 seq2750648 91.5 3e-13 >seq2442759 Length=1285 Score = 150 bits (166), Expect = 4e-31 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| ||||| | |||||| ||||| || || |||||||||||||| | || || | || Sbjct 98 TCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGGCC 157 Query 151949 ATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||| || ||||| || || ||||| | |||||||||||| | | || || ||| Sbjct 158 ATCTTCCAGCTGCTTT--CCAGCAAAGATCAACCTCTGCTGGTCGGGTGGAATGCCCTCC 215 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || ||| || ||| | || | | |||||||| |||||| ||||| ||| Sbjct 216 TTATCTTGGATCTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTCTACCTCAAGGGTA 275 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||| |||||||| |||| |||||| || Sbjct 276 ATGGTCTTCCCAGTGAGTGTCTTCACAAAGATCTGCATGTT 316 >seq2732657 Length=3626 Score = 134 bits (148), Expect = 3e-26 Identities = 172/234 (74%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 || ||| ||||| ||||||||||| || || || ||||||||||| | || || | || Sbjct 3386 TCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAATCAGACAATGTACGACC 3445 Query 151949 ATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||| | ||||| || || ||||| | |||||| ||||| | | || |||||| Sbjct 3446 ATCTTCCAACTGCTTT--CCAGCAAAGATCAACCTCTGTTGGTCTGGAGGAATACCTTCC 3503 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || ||||||| | || | | | ||||| ||||| ||||| || Sbjct 3504 TTATCTTGGATCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCTACCTCAAGGGTT 3563 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCTA 152119 || || || || ||||| ||||| ||||||| |||||| ||| |||| |||| Sbjct 3564 ATGGTCTTTCCTGTGAGTGTCTTGACGAAGATCTGCATACCACCTCTTAATCTA 3617 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || || || || | ||| || ||||| || || || || ||||| || | | ||| Sbjct 2241 CTAAGCCTAAGAACTAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGACAGAGTG 2300 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || || || || ||||| |||||||||||||| | | ||| ||| Sbjct 2301 CGACCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGAGGGATACCT 2360 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| ||| || ||| |||| | | |||||||| ||| ||||| || Sbjct 2361 TCCTTGTCTTGAATCTTTGCCTTTACATTCTCAATGGTGTCTGAAGGCTCCACTTCTAGG 2420 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| || || || |||||||| || | ||||| Sbjct 2421 GTAATTGTTTTTCCTGTAAGGGTCTTCACAAAAATTTGCAT 2461 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||| ||| ||||| ||||||||||| || || || |||||||| || | || || Sbjct 2925 CTAAGTCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAATGTG 2984 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || ||| || || ||||| ||||| |||||||| | | || ||| Sbjct 2985 CGGCCATCTTCCAGTTGTTTACCTGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATACCT 3044 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || ||||||| | || | | | ||||| || || ||||| Sbjct 3045 TCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCAACCTCAAGT 3104 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| || ||||| |||| |||||| Sbjct 3105 GTGATGGTCTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 3145 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| ||||| | |||||| ||||| || || || ||||||||||| | || || | | Sbjct 1788 AGTCTAAGGACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGACAATGTACGC 1847 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || |||||||| || | | || || ||| Sbjct 1848 CCATCTTCCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGAATGCCCTCC 1907 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || ||| ||| ||| | || | |||| || || ||||| | ||| Sbjct 1908 TTGTCCTGGATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACTTCCAAAGTG 1967 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||||||||||| |||||| Sbjct 1968 ATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 Score = 111 bits (122), Expect = 4e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || ||||| || | ||| || ||||| || || || || ||||| || | ||||| Sbjct 2013 CTAAGCCTGAGAACCAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGACAAAGTA 2072 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| | || || || ||||| | ||||||||||| | | ||| ||| Sbjct 2073 CGACCATCTTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATACCT 2132 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || ||||||| | || | | | || || |||||||| | Sbjct 2133 TCCTTATCTTGGATCTTGGCTTTGACATTTTCAATGGTATCAGATGGTTCTACTTCCAAT 2192 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || ||||||||||||| |||||| Sbjct 2193 GTGATGGTCTTTCCAGTAAGTGTCTTCACGAAGATCTGCAT 2233 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| || || || || ||||| || | || || | |||||||| | Sbjct 2711 CAAG-TGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGACAATGTGCGGCCATCTTCCA 2769 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| |||||||||||||| | | || |||||||| ||||| | Sbjct 2770 GCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACCTTCCTTATCTTGGA 2829 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||||| | || | | |||| || |||||||| | || || || || | Sbjct 2830 TCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCTACTTCCAAGGTGATGGTCTTTC 2889 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || || || || | |||||| Sbjct 2890 CAGTGAGGGTTTTAACAAATATCTGCAT 2917 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| || || ||||| |||||||||||||| | || || | |||||| Sbjct 3162 AGCACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAGGTACGACCATCT 3221 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || || || | |||||| ||||| | | || |||||||| || Sbjct 3222 TCCAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGAATGCCTTCCTTATCC 3281 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| || ||| |||| | | | || ||| || ||||| | || || || Sbjct 3282 TGAATCTTTGCCTTCACATTCTCAATGGTATCAGAAGGTTCGACTTCCAATGTGATGGTC 3341 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || || || | ||||| Sbjct 3342 TTTCCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 >seq642385 Length=370 Score = 107 bits (118), Expect = 4e-18 Identities = 166/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| ||||| | ||| || ||||| || || ||||||||||| || | || || | || Sbjct 51 TCTAAGGACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTGACAATGTGCGGCC 110 Query 151949 ATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||| || ||||| || || ||||| | |||||| ||||| | | ||| |||||| Sbjct 111 ATCTTCCAGCTGCTTT--CCAGCAAAGATCAACCTCTGTTGGTCTGGGGGGATCCCTTCC 168 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || || ||| | || | |||||| ||| | |||| ||| Sbjct 169 TTATCTTGGATCTTGGCCTTCACAATTTCAATTGAGTCTGATGGATCTCGTACAAGCGTA 228 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCTA 152119 | || || || || || ||||| ||||||| |||||| ||| |||| |||| Sbjct 229 AGGGTCTTTCCTGTTAGTGTCTTGACGAAGATCTGCATACCACCTCTTAATCTA 282 >seq2750648 Length=12224 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | || | ||||| ||||| |||||||| ||||| ||||| | | | | Sbjct 11043 CTAAGTCTCAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGTAATACAT 10984 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| ||| |||||||| || | | ||| || || | | || ||| Sbjct 10983 TTATTATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCT 10924 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||| ||||||||||| | | |||| | ||| |||||||| | | Sbjct 10923 TCTTTGTCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCTACTTCTATA 10864 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT-TTAC 152109 ||||| || || || ||||| || || ||||| | |||||| |||| Sbjct 10863 GTAATTGTCTTACCAGTGAGTGTTTTTACGAATATTTGCATTATTAC 10817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113156119519752