Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2732095 302 5e-77 seq308505 129 6e-25 seq353231 123 3e-23 >seq2732095 Length=3591 Score = 302 bits (334), Expect = 5e-77 Identities = 559/814 (69%), Gaps = 12/814 (1%) Strand=Plus/Minus Query 23160 TTAAAAATCTTCATCTAAAGTGAATTT-CACTGCTTTATCACTATTCATAACACCCATTT 23218 ||||||||| |||| | |||||| | | ||| | | | || |||||| || || Sbjct 1830 TTAAAAATCAGCATCCAGAGTGAAGCTACGCTGGTCTGTG-CTTGACATAACTCCACATT 1772 Query 23219 TTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTT 23278 |||| || || || || | |||| || || || || |||||||| | ||||| |||| Sbjct 1771 TTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCCTCAAGAGATATGTTTT 1712 Query 23279 CCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTT--ACATGATAATTCCTTTAA 23336 |||| || ||||||||||| | ||| || | |||| ||| || ||| | Sbjct 1711 CCATGAAGTCAAATGGATTCTCTGCATTGTAAA--GCTTATCACAGCCTAGCTCCACAAG 1654 Query 23337 AAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAG 23396 ||| | |||||| ||||||||||| ||||| | ||| | | || |||| ||||| || || Sbjct 1653 AAGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAGTTCATACCAATGAG 1594 Query 23397 TTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTAT 23456 || || || | |||||| ||||||| || |||||| || ||||| | ||| || Sbjct 1593 ATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACGGCATCATCAATGAT 1534 Query 23457 T---TGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAAACATGC 23513 |||||| | || |||||| | | |||| ||| |||| | ||| || Sbjct 1533 AGACTGAACATGC---TGTTGACTAGGCTTGTTTACCAAATGCTTGAACATGAGACAGGC 1477 Query 23514 AAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGG 23573 ||| ||| || || ||||||||||| || |||||||| ||| || | || || Sbjct 1476 AAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAAGGTAAGACCAGG 1417 Query 23574 CATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACC 23633 ||| | || ||||| || | |||||| || |||||||| || ||| ||||||||||| Sbjct 1416 CATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGCTGAAGAAAATACC 1357 Query 23634 CTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCA 23693 || ||||| |||||||| | | |||| | || | | ||| | | || | |||||| Sbjct 1356 TTCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTTCATGGGCAATCCA 1297 Query 23694 tttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAG 23753 | | | ||| | ||||||| ||| ||||| | || |||| || || || || Sbjct 1296 TCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAACGGCATTGAACAG 1237 Query 23754 AAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGA 23813 | ||| ||||||| ||| | || || || | || |||||||| ||||||||| Sbjct 1236 TCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAACTGTACATTTCACT 1177 Query 23814 ATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAAC 23873 || |||||||| || ||||| || || |||||||| ||||| ||||| | | |||||| Sbjct 1176 GTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTTCTGGAACTTGAAC 1117 Query 23874 ATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAA 23933 || | | ||||| | | | |||||| |||||||| |||||| |||||| || || Sbjct 1116 TTCTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAGAAGCAGCGAAAAA 1057 Query 23934 AGCAAGAACATATTTTATAAAATGTCTTTCATCA 23967 || || |||| || |||||||| || ||| Sbjct 1056 TGCCAGCACATGGGAAATGAAATGTCTCTCCTCA 1023 >seq308505 Length=331 Score = 129 bits (142), Expect = 6e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 8496 TAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTG 8555 |||||||| | |||||| | | ||| |||||||||||| |||||||||||||| || Sbjct 1 TAGTAGAGGTGGAGTTTCATCTTACTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTA 60 Query 8556 ATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGG 8614 ||||| | |||| ||||||||||||||||||||||||||||||||||||| ||| || Sbjct 61 ATCCATCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCCGG 119 >seq353231 Length=336 Score = 123 bits (136), Expect = 3e-23 Identities = 173/240 (72%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||||| |||||||||||||| ||||||||||| || || | | ||| |||| Sbjct 247 TCTCACTTTGTTGCCCAGGCTGAAGTGCAGTGGCATGGTCGTAATTTATTGCCTCCTCAA 188 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 ||| ||| | ||| || ||| ||||||||||||| |||||||||||| |||| || Sbjct 187 ATTCCTGGGATGAAGAGATCCTCTTGCCTCAGCCTCCTGAGTAGCTGGGACAACAGACAC 128 Query 8464 AAGCCAC---CACGCCAAGCTAATTTTT--GTATTTTTAGTAGAGAGAGGGTTTCACCAT 8518 |||| | |||| || ||||| | ||||| ||||| ||| ||||||| Sbjct 127 GTACCACATGCTGTCCAATCTTCTTTTTAAATTTTTTTTCTAGAGGCTAGGTCTCACCAT 68 Query 8519 GTTGGCCAGGCTGGTC-TCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCA 8577 ||| ||||||| ||| | ||||||||| ||||| | ||| || |||| ||||| || Sbjct 67 CTTGCCCAGGCTTGTCTTTGAACTCCTGGCCTCAAGCCATCTTCCCACCTCAGCCTCTCA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503557208756800