Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2732657 131 1e-25 seq2442759 125 5e-24 seq642385 95.1 8e-15 >seq2732657 Length=3626 Score = 131 bits (144), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||| | |||| ||||| || ||||| || ||||||||||| | | | ||| Sbjct 1788 AGTCTAAGGACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGACAATGTACGC 1847 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || |||||||||| | ||||||||||| || | || ||| Sbjct 1848 CCATCTTCCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGAATGCCCTCC 1907 Query 44240 TTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 || ||| ||||| ||| || | || | || ||||| | || ||| || |||| || Sbjct 1908 TTGTCCTGGATCTT-TGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACTTCCAAAGT 1966 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||| |||||||||||||||||||| ||||| Sbjct 1967 GATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 Score = 120 bits (132), Expect = 2e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| || | || |||||||| || ||||| || |||||||| Sbjct 3368 TTGCATACCACCTCTCAATCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTA 3427 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | | | || | || |||| |||||| || ||||||||||| | ||| || || Sbjct 3428 ATCAGACAATGTACGACCATCTTCCAACTGCTTTCCAGCAAAGATCAACCTCTGTTGGTC 3487 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || ||| | ||||||||| || ||||| || | || | ||||| || | | Sbjct 3488 TGGAGGAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTATCTGATGG 3547 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| | || || |||||||| ||||| ||||| |||||||| ||||| Sbjct 3548 TTCTACCTCAAGGGTTATGGTCTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 3601 Score = 114 bits (126), Expect = 9e-21 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| || | ||||| ||||| ||| || || |||||||||||||| Sbjct 3143 CATACCACCTCTCAATCGAAGCACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATC 3202 Query 44167 -GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | || | || |||| |||||| || ||||| ||||| | ||| || |||| Sbjct 3203 AGACAAGGT-ACGACCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTG 3261 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| ||||| | | ||||| || | | || Sbjct 3262 GTGGAATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTCTCAATGGTATCAGAAGGTT 3321 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| || || |||||||| |||||||| || || || |||||||| Sbjct 3322 CGACTTCCAATGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 Score = 105 bits (116), Expect = 5e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| || || ||||| || | || ||| | || || |||||||| || |||||| Sbjct 2271 TCCTTCTGAATATTGTAGTCAGACAGAGTGCGACCATCTTCAAGCTGCTTGCCTGCAAAG 2330 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||| | |||||| |||| ||| | ||||||||| || ||||| ||| | | || Sbjct 2331 ATCAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGAATCTT-TGCCTTTACATT 2389 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | |||||||| | | ||||| || | ||||| || ||||| || ||||||||||| Sbjct 2390 CTCAATGGTGTCTGAAGGCTCCACTTCTAGGGTAATTGTTTTTCCTGTAAGGGTCTTCAC 2449 Query 44326 GAAGATTTGCAT 44337 || |||||||| Sbjct 2450 AAAAATTTGCAT 2461 Score = 102 bits (112), Expect = 6e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| || || | || | || |||||| |||||| ||||| ||||| Sbjct 2456 TTGCATACCACCTCTGAGCCTGAGTACTAAATGGAGCGTGGACTCCTTCTGGATATTGTA 2515 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | | | || | || ||||||||||| || ||||| ||||| | ||| ||||| Sbjct 2516 ATCAGACAATGTACGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATC 2575 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | ||| | |||||||| || ||||| || | || | || || || | | Sbjct 2576 AGGAGGGATGCCTTCCTTATCTTGGATCTTAGTTTTAACATTTTCAATAGTATCAGATGG 2635 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | || || || ||||| |||||||| ||||| ||||| ||||| Sbjct 2636 CTCAACCTCAAGTGTTATGGTTTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 2689 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || || | |||| || || || ||||| || || ||||| || Sbjct 2003 CATACCGCCTCTAAGCCTGAGAACCAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTC 2062 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | || | || |||| |||||| || ||||||||||| | |||||| |||| Sbjct 2063 AGACAAAGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGGTCTGG 2122 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||||||| || ||||| || | || | ||||| || | | ||| Sbjct 2123 GGGGATACCTTCCTTATCTTGGATCTTGGCTTTGACATTTTCAATGGTATCAGATGGTTC 2182 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| || || |||||||| || || |||||||||||||| ||||| Sbjct 2183 TACTTCCAATGTGATGGTCTTTCCAGTAAGTGTCTTCACGAAGATCTGCAT 2233 >seq2442759 Length=1285 Score = 125 bits (138), Expect = 5e-24 Identities = 174/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| | ||| | |||| ||||| || ||||| |||||||||||||| Sbjct 83 CATACCACCTCTTAATCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATC 142 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | | ||| | || ||||||||||| || ||||||||||| | |||||| || | Sbjct 143 TGACAATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGG 202 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| || ||||| ||| | || | |||||||| | | || Sbjct 203 TGGAATGCCCTCCTTATCTTGGATCTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTC 262 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAAT 44346 ||||| | ||||| ||||| || ||||| |||||||| ||||| |||||| ||| | Sbjct 263 TACCTCAAGGGTAATGGTCTTCCCAGTGAGTGTCTTCACAAAGATCTGCATGTTGTACCT 322 Query 44347 GAAA 44350 |||| Sbjct 323 GAAA 326 >seq642385 Length=370 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| | ||| | |||| || || || ||||| ||||||||||| || Sbjct 36 CATACCACCTCTTAATCTAAGGACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTC 95 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | | ||| | || ||||||||||| || ||||||||||| | ||| || |||| Sbjct 96 TGACAATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGG 155 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTC-GGCGGATT 44285 || | |||||||| || ||||| ||||| || | || | ||| | |||| Sbjct 156 GGGGATCCCTTCCTTATCTTGGATCTTGGCCTTCACAATTTCAATTGAGTCTGATGGAT- 214 Query 44286 CCACCT-CCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | | | | | ||||| |||||||| || || ||||| |||||||| ||||| Sbjct 215 -CTCGTACAAGCGTAAGGGTCTTTCCTGTTAGTGTCTTGACGAAGATCTGCAT 266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347921972933304