Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2732657 161 2e-34 seq2750648 129 1e-24 seq2442759 120 7e-22 >seq2732657 Length=3626 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| || || ||||||||||| || ||||| || ||||| |||||| Sbjct 2458 CAAATTTTTGTGAAGACCCTTACAGGAAAAACAATTACCCTAGAAGTGGAGCCTTCAGAC 2399 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||||||| ||||| ||||| |||||||| |||||||| Sbjct 2398 ACCATTGAGAATGTAAAGGCAAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAGCAG 2339 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || ||||| |||||||| | ||||| | || || || | Sbjct 2338 AGGCTGATCTTTGCAGGCAAGCAGCTTGAAGATGGTCGCACTCTGTCTGACTACAATATT 2279 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || ||||| ||||| ||| | ||| | || || ||| Sbjct 2278 CAGAAGGAATCTACACTCCATTTAGTTCTTAGGCTTAGA 2240 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| ||||||||||| || ||||| || ||||| ||| ||||| Sbjct 3142 CAGATCTTTGTGAAAACCCTCACAGGAAAGACCATCACACTTGAGGTTGAACCATCAGAT 3083 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| ||||| || || || ||||| || || || ||||||||| Sbjct 3082 ACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAGCAA 3023 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || ||||| || |||||||| | || | | || || ||| | Sbjct 3022 AGGCTGATCTTTGCAGGTAAACAACTGGAAGATGGCCGCACATTGTCTGACTACAACATT 2963 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || ||||| || || || ||||| | |||| ||| Sbjct 2962 CAGAAGGAATCTACTCTTCACCTTGTACTCCGACTTAGA 2924 Score = 127 bits (140), Expect = 5e-24 Identities = 151/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| ||||||||||| || ||||| | || || ||| || || Sbjct 3370 CAAATTTTTGTCAAAACCCTCACAGGAAAGACCATCACATTGGAAGTCGAACCTTCTGAT 3311 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || |||||||||||| || ||||| || || || ||||| || Sbjct 3310 ACCATTGAGAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCACCAGACCAACAG 3251 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 | | || || || || || ||| | |||||||| | || |||| | ||||| ||| | Sbjct 3250 AGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGTCGTAC-CTTGTCTGATTACAACAT 3192 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 ||| |||||||| ||||| ||| Sbjct 3191 CCAGAAAGAATCCACACTTCAT 3170 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||||||||| || || ||||| ||||| ||| ||||| Sbjct 3598 CAGATCTTCGTCAAGACACTCACAGGAAAGACCATAACCCTTGAGGTAGAACCATCAGAT 3539 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| ||||| || || || ||||| || ||||| ||||| || Sbjct 3538 ACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAACAG 3479 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || ||||| ||| | |||||||| | || | | ||||| ||| | Sbjct 3478 AGGTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGATTACAACATT 3419 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || || ||||| Sbjct 3418 CAGAAGGAATCTACTCTTCACCTTGT 3393 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| |||||||||||||| || || || ||||| || || || Sbjct 2686 CAGATCTTTGTGAAAACCCTCACAGGAAAAACCATAACACTTGAGGTTGAGCCATCTGAT 2627 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||| || || || ||||| |||||||| || || || Sbjct 2626 ACTATTGAAAATGTTAAAACTAAGATCCAAGATAAGGAAGGCATCCCTCCTGATCAACAG 2567 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || || || || ||||| |||||||| | || | | ||||| || || Sbjct 2566 AGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAATATC 2507 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || ||| | || | || |||||| Sbjct 2506 CAGAAGGAGTCCACGCTCCATTTAGTACTCAGGCTCAGA 2468 >seq2750648 Length=12224 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| ||||| || || || || || | || || ||| ||| Sbjct 10826 CAAATATTCGTAAAAACACTCACTGGTAAGACAATTACTATAGAAGTAGAATCGGGAGAG 10885 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || | |||||||| || || ||||||||||| || ||||| || || || Sbjct 10886 ACAATAGAAAAACTTAAACAAAAAATACAAGACAAAGAAGGTATTCCTCCCGATCAACAG 10945 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || |||||||| ||||| | |||||| | | || | ||||||||| | Sbjct 10946 CGATTAATTTTCGCCGGTAAACAATTAGAAGATAATAAATGTATTACTGATTATAACATT 11005 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| ||| | ||| | ||||||||||| ||| Sbjct 11006 CAAAAAGAATCTACAATTCATTTGGTTTTGAGACTTAGA 11044 >seq2442759 Length=1285 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| || || || || ||||| ||||| || |||||| Sbjct 310 CAGATCTTTGTGAAGACACTCACTGGGAAGACCATTACCCTTGAGGTAGAGCCTTCAGAC 251 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||| || || || || || || || || |||||||| Sbjct 250 ACCATCGAAAATGTAAAGGCAAAGATCCAAGATAAGGAGGGCATTCCACCCGACCAGCAG 191 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || ||||| ||||| |||||||| | || | | ||||| ||| || Sbjct 190 AGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACATTGTCAGATTACAACATC 131 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || ||||| ||||| ||| | || | ||| | ||| Sbjct 130 CAGAAGGAATCTACACTTCATTTGGTCCTTAGATTAAGA 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1161307502462128