Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03]
2,750,712 sequences; 1,948,953,281 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq2732657 87.8 2e-12
>seq2732657
Length=3626
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||| ||| || || |||||||||||||| || || || | || ||| | || ||
Sbjct 1797 ACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGACAATGTACGCCCATCTTCC 1856
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| || || ||||| | ||| || || | |||| || |||||||||| ||
Sbjct 1857 AGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCC-TG 1915
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
| ||||||| || | | ||||| | || || |||| || || || ||
Sbjct 1916 GATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACTTCCAAAGTGATGGTCTT 1975
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || ||||| ||||| ||||||||
Sbjct 1976 TCCAGTGAGGGTCTTCACGAAGATCTGCAT 2005
Score = 82.4 bits (90), Expect = 7e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731
||||||||||| || ||||| || || ||||| | || || ||||||||||| || ||
Sbjct 2271 TCCTTCTGAATATTGTAGTCAGACAGAGTGCGACCATCTTCAAGCTGCTTGCCTGCAAAG 2330
Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGA 41790
||||| | ||| ||||| | || | | ||||||| | ||| | |||| ||| |
Sbjct 2331 ATCAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGT-CTTGAATCTTTGCCTTTACATT 2389
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
| | ||||| | |||||| || | || || ||||| || || || ||||| ||
Sbjct 2390 CTCAATGGTGTCTGAAGGCTCCACTTCTAGGGTAATTGTTTTTCCTGTAAGGGTCTTCAC 2449
Query 41851 GAAAATCTGCAT 41862
||||| |||||
Sbjct 2450 AAAAATTTGCAT 2461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 446408185494400
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |