Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq42356 266 4e-66 >seq42356 Length=8389 Score = 266 bits (294), Expect = 4e-66 Identities = 896/1381 (65%), Gaps = 32/1381 (2%) Strand=Plus/Minus Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 |||||||| |||||| |||||||| || || || || || | || || ||||| || Sbjct 5803 CTTGTCCACTGTGAACTGAATGGGCTTGGCAGCAGGCTTTGTCCTCAGGTAATACATGCC 5744 Query 52858 CGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCG 52916 ||||| ||||| || || ||| || || | |||||| | || ||| ||| Sbjct 5743 TGTTTTCAGACC-AGCCTTCCACCCATACAGATGCATGGAGCACATCTTCCCATAGGTCG 5685 Query 52917 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 52976 | | ||| || ||||| |||| || || || || || ||| | || || | ||| |||| Sbjct 5684 GCTGTGCAATGTGGATGTTCAGTGACTGGCTCTGGTCAATGTAAGCACCGCGGTCAGCAG 5625 Query 52977 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 53036 |||| || || | ||||| |||| |||||||| | ||||| || | | ||| | | Sbjct 5624 CCATCTTCATCACAGTCTTCTGTGACATTTCCCACACCGTTTTGTACAATGCCTTTAGGT 5565 Query 53037 CTTCTGGAAGGT--TTG-TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGA 53093 | | ||| | ||| | | ||||| || |||||||| | || ||| ||||||| Sbjct 5564 CGTTTGGGATCCCCTTGATCTGTTGAATGGAGCCACCATCAGCAATGATCTGGTTCTTGA 5505 Query 53094 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 53153 ||| |||| | || ||| || | || | || || || | || || || | Sbjct 5504 CTTCAGGGCTCCACAGACCTCGCTCAGTCAGGTCTTTCAGCAGGTGGTGGTTCACGACCT 5445 Query 53154 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 53213 |||| || || |||| || | || || | |||| || || | || | ||||| Sbjct 5444 GAAACTCACCGGACAGAACACGGCGGACATACACATTAGAAGTGTAGGCCTCGATAGACT 5385 Query 53214 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 53273 |||| || || | ||| ||||| |||||||| || ||||| || |||| | || || Sbjct 5384 CATTGTTCCCAAGAATCTGAGCCGTTGATGCTGTGGGCATTGGAGCCAGGAGCAATGAAT 5325 Query 53274 TTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 53331 | | || || ||| | | ||||| ||||| || | | |||||| ||| || || | Sbjct 5324 TGCGTAGCCC--ATGCTTGGCAATTTTCTCTTTCAGTGCTGCCCAATCCCACAGGTCAGT 5267 Query 53332 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 53390 || || || || | || || ||||| | || ||| | | Sbjct 5266 TGGGGTCACACCCCACAAGTCATACTGAAGCCTGCCCTTGCTGGCAGGACTGCCCT-CGT 5208 Query 53391 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 53450 | || || ||||| || | ||||||||| |||||||| || ||||| | |||| | || | Sbjct 5207 AAGTCTCATATGGACCATACTTCTCAGCAAGTTCACAGCTGGCCTCAAGTGCAGCATAGT 5148 Query 53451 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAAT 53510 | || || || || |||| |||| ||| ||||||||| || ||||||||||| Sbjct 5147 ACATTGTCTCAAATATCTGAATATTGAGACGCTGTGCTTCCTCACTCTCAAATGGATAGC 5088 Query 53511 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 53570 | | ||| || || ||||| | |||||||||||||| || || || | ||||||| Sbjct 5087 GCATCAAAATGAATGCATCTGCCAGACCTTGAACACCAATTCCAATGGGACGATGTCTCA 5028 Query 53571 TATTAGAGATTTCA---GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 53627 | ||||| | || || || |||| || || || || | || || ||||| || | Sbjct 5027 TGTTAGA---TGCACGTGCCTCAGGAACCGGGTAGTAGTTGACCTCAATGATTTTGTTCA 4971 Query 53628 GGTT---TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATTGTC-- 53681 |||| | |||| ||| | || ||| | ||| || ||||||| | || | Sbjct 4970 GGTTGCGTGTGAC---TACATGAACAACACGCCGCAGCTTCTCAAAATCATAGGTGGCAT 4914 Query 53682 CATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAG 53741 || ||||||||||||| |||| ||||||||||| || || || | |||| | Sbjct 4913 CAGGGCGAACAAACATGTTCAGGGCAACGGATGCCAGATTGCACACAGCAATTTCATCTG 4854 Query 53742 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 53801 || || || | |||||||| || || || || ||||| ||||| || | ||| | Sbjct 4853 CAGAGCTGTACTGAACAATCTCAGTACACAGGTTGCTGCACTTAATGGTACCCACATTCT 4794 Query 53802 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAA 53861 | || || ||| ||| || ||||| || || | |||||||| |||||||| || | Sbjct 4793 GCTGGTTGGACTTGCGGTTGCAGGCATCTTTGTAGACCATGAATGGAGTACCAGTCTCCA 4734 Query 53862 TCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCT 53921 ||||| ||| ||||| ||| | || || || ||||| | | Sbjct 4733 CCTGGGCTTCAATAATACTGCGCCACAGCTGGCGTGCAGGAATCTGCTTGTTGTACCGCC 4674 Query 53922 TTTCTCTTTCGTA--TAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAA 53979 ||| |||| || | ||| | | |||||||| ||||||||||| | |||| Sbjct 4673 CCTCTTTTTCATACTTCTCGTAGAGGGCC--TCAAACTCCTCTCCCCAAACTTCCTCCAG 4616 Query 53980 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 54039 || ||||| | | || ||||| | ||||| | ||| ||| ||| || ||| Sbjct 4615 CCCTGGACACTTCTTTGGGCACATGAGTGACCATTGGGAATCAGCCTCCACCCGACGCAT 4556 Query 54040 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTC 54098 || |||||||| ||||| | ||| ||| || ||||| | | || ||| || || | Sbjct 4555 GAAAAGATCAGGGATCCACAAAGC-ATAGAAAAGATCACGAGCTCGCATTTCTTCCTTCC 4497 Query 54099 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 54158 |||| ||||| ||| ||||| | | ||| | |||||| || |||| ||| | Sbjct 4496 CTGTGTTCTTGCGAAGGGAAAGGAAGCTGAAGACATCCGCATGCCAAGGCTCCAGGTAGA 4437 Query 54159 T 54159 | Sbjct 4436 T 4436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593232143334480