Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq8136 293 2e-74 seq29144 154 2e-32 seq16489 129 6e-25 >seq8136 Length=40417 Score = 293 bits (324), Expect = 2e-74 Identities = 257/320 (80%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || ||||| ||||| || |||| || ||| | |||||||| ||||||| ||| Sbjct 19744 GAGCCCCTTCTGCGAGAGAATCCAGGCCGATTTGTGGTCTTCCCCATCAAATACCCCGAC 19685 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| ||||||||| ||||| |||||||| ||||||||||| ||||||||||| || Sbjct 19684 ATTTGGGCCATGTACAAGAAGGCAGAGGCGTCCTTCTGGACCGTGGAGGAGGTGGATCTC 19625 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 |||| ||| || |||||||| |||||||| |||||||||| ||||| ||| Sbjct 19624 TCCAGAGACCTGAAGTACTGGGAGAAGCTGAACGACGACGAGCGCCACTTCATATCCCAC 19565 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || || ||||| ||||||||| || || |||||||||||||||||||||||| | ||| Sbjct 19564 GTCCTCGCCTTCTTCGCCGCCTCGGATGGGATCGTCAACGAGAATCTGGTCGAGAGGTTC 19505 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 | ||||||||||| ||| | ||||| || ||||| ||||| || ||| |||| |||||| Sbjct 19504 GGGCAGGAGGTGCAAGTGACAGAGGCCCGCTGCTTTTACGGGTTCCAGGTCGCTATGGAG 19445 Query 116876 AACGTGCACTCGGAAATGTA 116895 ||||| |||||||| ||||| Sbjct 19444 AACGTCCACTCGGAGATGTA 19425 Score = 172 bits (190), Expect = 6e-38 Identities = 297/429 (69%), Gaps = 2/429 (0%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || || ||||| || ||||| ||||| || || ||||| ||||| ||| | Sbjct 19318 TGTTCAATGCAATCGAAACCATGCCTTGCGTTAAGCGCAAAGCCGACTGGGCCCTGAAGT 19259 Query 117006 GGATCGCCGGCAGAG-AGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 |||| || || || || || | || | ||| || | | || || || || || || Sbjct 19258 GGATAGC-GGATGATCAGTCCACGTTTGCCGAACGTGTAATCGCTTTTGCTGCGGTGGAA 19200 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 ||| | ||||| || || |||||||||||||| || ||||| ||||| || ||| | ||| Sbjct 19199 GGCATTTTCTTCTCCGGTAGTTTCGCCGCCATCTTCTGGCTGAAGAAGCGTGGCGTTATG 19140 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTT 117184 || || || || |||||||||||| | ||||| | |||||||| || || ||||||||| Sbjct 19139 CCTGGACTTACCTTCAGCAACGAGTTGATCTCGCGCGACGAGGGCCTCCACTGCGACTTT 19080 Query 117185 GCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATC 117244 ||||| | ||||||| ||| |||| | |||| | | | |||| | ||| Sbjct 19079 GCCTGCCTCATGTTCAAACATCTGGTCAACAAACCGTCGAAAGAGAGAGTCACTGCGATT 19020 Query 117245 GTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTG 117304 | |||| || || | ||||||||| || || || | || || || ||| || Sbjct 19019 ATTGCCGATGCCGTGACAATCGAGCAGGAATTTCTGACTAAGGCACTACCCGTGGACATG 18960 Query 117305 CTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTG 117364 | ||| | || ||| | ||| ||| ||||| ||||| || ||||| ||||| || Sbjct 18959 ATTGGAATGAACTGCCAGCTCATGAAGCAGTACATTGAGTTTGTGGCCGATAGGCTTTTG 18900 Query 117365 CTCGAGCTG 117373 |||| ||| Sbjct 18899 GTCGAACTG 18891 >seq29144 Length=118640 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || ||||| | || Sbjct 105639 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTCGAGCCTTCC 105698 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || || ||||| | |||||| Sbjct 105699 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCAGACCAG 105758 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| |||| |||||||| | |||||||||| Sbjct 105759 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACAAC 105818 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || || || || ||| ||||| || | |||||| Sbjct 105819 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTGCGCCTGCGTGGCGGC 105866 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| |||||||| || ||||| ||||| ||| |||| || || | | | Sbjct 104955 ATGCAGATCTTCGTCAAAACGCTGACTGGCAAGACCATTACCCTCGAAGTGGAGCCTAGC 105014 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || | ||| || | || || ||||| |||||| | ||||| Sbjct 105015 GACACCATTGAGAACG-TGAAAGCAAAGATCCAGGATAAGGAGGGTATCCCCCCAGACCA 105073 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || ||| |||| || | ||||| || | ||||||||| Sbjct 105074 GCAGCGCCTGATCTTCGCCGGTAAGCAGTTGGAGGATGGCCGCACTCTGAGCGACTACAA 105133 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || || ||||| |||||| | | ||||||| Sbjct 105134 CATCCAGAAGGAATCAACTCTCCATCTGGTGTTGAGACTTCGGGGCGG 105181 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || |||||||| | || || || | | | Sbjct 105183 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACGTTGGAGGTTGAGCCTAGC 105242 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || || || || | |||||| Sbjct 105243 GACACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 105302 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || || | |||||||| | |||||||||| Sbjct 105303 CAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTGAGCGACTACAAC 105362 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| ||||||| ||||| ||| Sbjct 105363 ATCCAGAAGGAGTCCACGCTCCATCTGGTG 105392 Score = 136 bits (150), Expect = 4e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| ||||||||| | || || || | | | Sbjct 105411 ATGCAGATCTTCGTTAAGACGCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCTAGC 105470 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||||| || || | ||||| ||||||||||| | ||||| Sbjct 105471 GATACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCCGACCA 105529 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| ||||| || |||| || ||||| | ||||||||| Sbjct 105530 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGTACCCTGAGCGACTACAA 105589 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || || || Sbjct 105590 CATCCAGAAGGAGTCGACCCTTCA 105613 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| |||||||| |||| || || | | | Sbjct 104727 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTTGAGCCTAGC 104786 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || || || || | ||||| Sbjct 104787 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCA 104845 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| || | ||||||||| Sbjct 104846 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGCGACTACAA 104905 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || |||||| | || |||| Sbjct 104906 TATCCAGAAGGAGTCGACCCTGCATTTGGTCCTGCG 104941 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| |||||||| | || || || | | | Sbjct 104271 ATGCAGATCTTCGTTAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCGAGC 104330 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | || || |||||||| ||| | || || Sbjct 104331 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCA 104389 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || || | |||||||| | ||| ||||| Sbjct 104390 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAAGATGGCCGCACCCTGAGCGATTACAA 104449 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||| | || || ||||| ||| Sbjct 104450 CATCCAGAAGGAGTCTACACTTCATCTGGTG 104480 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| |||||||| |||| || || | | | Sbjct 104499 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTTGAGCCTAGC 104558 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | ||||| || ||||| ||| | ||||| Sbjct 104559 GATACCATTGAGAACG-TGAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 104617 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || ||| |||| || | ||||| || | ||||||||| Sbjct 104618 GCAGCGCCTGATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTGAGCGACTACAA 104677 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||||||||||| | || || ||||| |||||| Sbjct 104678 CATCCAGAAGGAATCAACTCTCCATCTGGTGTTG 104711 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| |||||||| | || || || | | | Sbjct 103729 ATGCAGATTTTTGTGAAAACCCTGACTGGCAAGACCATCACGCTTGAGGTTGAGCCTAGC 103788 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || |||| || || |||||||| ||| | || ||| Sbjct 103789 GACACCATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGCATTCCCCCAGATCAG 103848 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| ||||| |||||||| || | ||||| || | || || || Sbjct 103849 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGAGTGATTATAAT 103908 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | ||||| ||||| ||| |||| Sbjct 103909 ATCCAGAAGGAGTCGACGCTCCATCTGGTGCTGCG 103943 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| | || || || | | | Sbjct 103957 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCTAGC 104016 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | || || ||||| ||||| | |||||| Sbjct 104017 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGGATCCCACCAGACCAG 104076 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || || | |||||||| | |||||||||| Sbjct 104077 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGAGCGACTACAAC 104136 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | ||||| || | ||| |||| Sbjct 104137 ATCCAGAAGGAGTCGACGCTTCACTTGGTGCTGCG 104171 >seq16489 Length=130489 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | ||||| || ||||||||| | || || || ||| | Sbjct 52298 ATGCAGATCTTTGTCAAGACTTTGACGGGGAAGACCATCACCCTTGAGGTGGAGGCCTCG 52239 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || || | ||||| ||||| |||||| | |||||| Sbjct 52238 GACACTATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCAGACCAG 52179 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| || | || || || || ||||| || | |||||||| | |||||||||| Sbjct 52178 CAGCGACTAATTTTTGCTGGGAAGCAACTGGAGGATGGCCGCACCCTGAGCGACTACAAC 52119 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||| | || || ||||| ||| | ||| Sbjct 52118 ATCCAGAAGGAGTCGACCCTCCATCTTGTGCTCCGC 52083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514794459731760