Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq29144 138 1e-27 seq8136 116 3e-21 seq16489 111 1e-19 >seq29144 Length=118640 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||| |||| || ||||| || || || || ||||| | Sbjct 103957 TACCACCACGCAGACGCAGCACCAGATGGAGCGTCGACTCCTTCTGGATATTATAATCAC 103898 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| ||||| |||||| ||||| || || ||| ||||||||||||||||||| || | Sbjct 103897 TCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGG 103838 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||||||||| || ||| || || || | |||| |||||| | ||| | Sbjct 103837 GAATGCCCTCCTTATCCTGAATCTTCGCCTTCACATTCTCGATGGTGTCGCTAGGCTCAA 103778 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || ||||| ||||| ||||| |||||||||||||| Sbjct 103777 CCTCAAGCGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 103729 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || | ||||| || | ||||||||| || || ||||||||||||| Sbjct 104499 TACCGCCACGAAGCCTGAGCACCAGATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGC 104440 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| ||||| ||| |||||||| || |||||| ||||||||||||||||||| || | Sbjct 104439 TCAGGGTGCGGCCATCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGGG 104380 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||||||||| || || || || || | |||| |||||| | ||| | Sbjct 104379 GAATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTCGGCTCAA 104320 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || ||||| |||| || || || || |||||||| Sbjct 104319 CCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATCTGCAT 104271 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | ||||||||||| |||| || || || || || |||||||| |||| Sbjct 105183 TACCGCCCCGAAGTCTCAACACCAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCGC 105124 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| |||||| |||||| | ||| || || ||| |||| || |||||||| || || | Sbjct 105123 TCAGAGTGCGGCCATCCTCCAACTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCTGGGG 105064 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||| || || ||| ||| || | || | |||||| | ||| | Sbjct 105063 GGATACCCTCCTTATCCTGGATCTTTGCTTTCACGTTCTCAATGGTGTCGCTAGGCTCCA 105004 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| ||| | || ||||| ||||| ||||| || || |||||||| Sbjct 105003 CTTCGAGGGTAATGGTCTTGCCAGTCAGCGTTTTGACGAAGATCTGCAT 104955 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | ||||||||||| |||| || || || || || |||||||| |||| Sbjct 104727 TACCGCCGCGAAGTCTCAACACCAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCGC 104668 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| |||||| |||||| | ||| || |||||| |||| || |||||||| || || | Sbjct 104667 TCAGAGTGCGGCCATCCTCCAACTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGGG 104608 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| ||||||||| || || || || | || | ||| || | ||| | Sbjct 104607 GAATGCCTTCCTTGTCTTGGATCTTAGCCTTCACGTTCTCAATGGTATCGCTAGGCTCAA 104548 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || | || ||||| || || || || || || |||||||| Sbjct 104547 CCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 104499 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||||| || ||||| || || |||||||| ||||||| ||||| || Sbjct 105851 CAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTC 105792 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| |||| || |||||||| || || || || || |||||||| Sbjct 105791 CTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGTGGGATCCCTTCCTTGTC 105732 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| | ||||||||| | ||| | || Sbjct 105731 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCGGAAGGCTCGACCTCCAGGGTGATGGT 105672 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||||| || || || || |||||||| Sbjct 105671 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 105639 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||||||| || || ||||| Sbjct 105619 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGGCCGTCCTCA 105560 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| | ||||||||| ||||| || |||||||||||||| Sbjct 105559 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGG 105500 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | ||| ||||| | ||| | || ||| Sbjct 105499 ATCTTGGCCTTGACGTTCTCGATGGTATCGCTAGGCTCAACCTCCAGGGTGATGGTCTTG 105440 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 105439 CCAGTCAGCGTCTTAACGAAGATCTGCAT 105411 >seq8136 Length=40417 Score = 116 bits (128), Expect = 3e-21 Identities = 290/436 (67%), Gaps = 11/436 (3%) Strand=Plus/Minus Query 44759 GAGATGCTTTTGAATGGTTTCGAGAATATGCCCTGCGT---GCGCAGAAAGGCCGAATGG 44815 ||| | || || |||| |||| | ||||| ||||| ||||| | ||||| ||| Sbjct 19325 GAGTTCCTGTTCAATGCAATCGAAACCATGCCTTGCGTTAAGCGCAAA---GCCGACTGG 19269 Query 44816 GCGATGAAGTATATTGACGATGAAAAGATAACTTTGGCCGAACGATTGGTCGCATTCGCC 44875 || |||||| || | ||||| || || || |||||||| | |||| || || Sbjct 19268 GCCCTGAAGTGGATAGCGGATGATCAGTCCACGTTTGCCGAACGTGTAATCGCTTTTGCT 19209 Query 44876 ATTGTCGAAGGAGTGTTCTTTTCGGGGAGTTTTGCGGCGATATTTTACATGAAAACCAAG 44935 || ||||| | ||||| || || ||||| || || || || | |||| | Sbjct 19208 GCGGTGGAAGGCATTTTCTTCTCCGGTAGTTTCGCCGCCATCTTCTGGCTGAAGAAGCGT 19149 Query 44936 GGAGTGATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCAC 44995 || || ||||| ||||| || || |||||||| ||||| ||| | ||||| || || ||| Sbjct 19148 GGCGTTATGCCTGGACTTACCTTCAGCAACGAGTTGATCTCGCGCGACGAGGGCCTCCAC 19089 Query 44996 ACCAACTTTGCCTGCCTC-TACTATAATACGAGAGTCGATCAAAAGTTGGACGCGCCCAC 45054 | |||||||||||||| | | || | | ||| | || || | | | | | Sbjct 19088 TGCGACTTTGCCTGCCTCATGTTCAAACATCTG-GTCAACAAACCGTCGAAAGAG---AG 19033 Query 45055 CGTCAACGACATGTTCTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCT 45114 |||| | || | |||| |||||| | |||||| ||||||| | || |||| || Sbjct 19032 AGTCACTGCGATTATTGCCGATGCCGTGACAATCGAGCAGGAATTTCTGACTAAGGCACT 18973 Query 45115 GCCCGAATCGTTGGTGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGC 45174 |||| || | ||||||||| | | |||| |||||||||||||||| || Sbjct 18972 ACCCGTGGACATGATTGGAATGAACTGCCAGCTCATGAAGCAGTACATTGAGTTTGTGGC 18913 Query 45175 CGATCGTCTTCTCGTC 45190 |||| | ||| | ||| Sbjct 18912 CGATAGGCTTTTGGTC 18897 >seq16489 Length=130489 Score = 111 bits (122), Expect = 1e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| ||||||| ||||| |||||| | Sbjct 52091 CAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCCA 52150 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | || || ||||| | || || |||||||| || || || || ||||||||||| | Sbjct 52151 GTTGCTTCCCAGCAAAAATTAGTCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGA 52210 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | |||| ||||||| | ||| ||||| | ||| | || || | Sbjct 52211 TCTTGGCCTTGACATTCTCGATAGTGTCCGAGGCCTCCACCTCAAGGGTGATGGTCTTCC 52270 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| ||| || ||||| |||||||| Sbjct 52271 CCGTCAAAGTCTTGACAAAGATCTGCAT 52298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433481696750092