Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq42356 275 8e-69 seq8136 114 2e-20 >seq42356 Length=8389 Score = 275 bits (304), Expect = 8e-69 Identities = 908/1396 (65%), Gaps = 32/1396 (2%) Strand=Plus/Minus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 |||||||| |||||| |||||||| || || || || || | || || ||||| || Sbjct 5803 CTTGTCCACTGTGAACTGAATGGGCTTGGCAGCAGGCTTTGTCCTCAGGTAATACATGCC 5744 Query 62096 CGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62154 ||||| ||||| || || ||| || || | |||||| | || ||| ||| Sbjct 5743 TGTTTTCAGACC-AGCCTTCCACCCATACAGATGCATGGAGCACATCTTCCCATAGGTCG 5685 Query 62155 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62214 | | ||| || ||||| |||| || || || || || ||| | || || | ||| |||| Sbjct 5684 GCTGTGCAATGTGGATGTTCAGTGACTGGCTCTGGTCAATGTAAGCACCGCGGTCAGCAG 5625 Query 62215 CCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62274 |||| || || | ||||| |||| |||||||| | ||||| || | | ||| | | Sbjct 5624 CCATCTTCATCACAGTCTTCTGTGACATTTCCCACACCGTTTTGTACAATGCCTTTAGGT 5565 Query 62275 CTTCTGGAAGGT--TTG-TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGA 62331 | | ||| | ||| | | |||||||| |||||||| | || ||| ||||||| Sbjct 5564 CGTTTGGGATCCCCTTGATCTGTTGAATGGAGCCACCATCAGCAATGATCTGGTTCTTGA 5505 Query 62332 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTT 62391 ||| |||| | || ||| || | || | || || || |||| || || | Sbjct 5504 CTTCAGGGCTCCACAGACCTCGCTCAGTCAGGTCTTTCAGCAGGTGGTGGTTCACGACCT 5445 Query 62392 GGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62451 | || || || |||| || | || || | |||| || || | || | |||| Sbjct 5444 GAAACTCACCGGACAGAACACGGCGGACATACACATTAGAAGTGTAGGCCTCGATAGACT 5385 Query 62452 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62511 |||| || || | ||| ||||| |||||||| || ||||| || |||| | || || Sbjct 5384 CATTGTTCCCAAGAATCTGAGCCGTTGATGCTGTGGGCATTGGAGCCAGGAGCAATGAAT 5325 Query 62512 TTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGA 62569 | | || || ||| | | ||||| ||||| || | |||||| ||| || || | Sbjct 5324 TGCGTAGCCC--ATGCTTGGCAATTTTCTCTTTCAGTGCTGCCCAATCCCACAGGTCAGT 5267 Query 62570 CGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 62628 || ||| ||| || || | || || ||||| | || ||| | | Sbjct 5266 TGGGGTCACACCCCACAAGTCATACTGAAGCCTGCCCTTGCTGGCAGGACTGCCCT-CGT 5208 Query 62629 ATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAAT 62688 | || |||||||| || | ||||||||| |||| ||| || ||||| | |||| | || | Sbjct 5207 AAGTCTCATATGGACCATACTTCTCAGCAAGTTCACAGCTGGCCTCAAGTGCAGCATAGT 5148 Query 62689 AAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 62748 | || || ||||| |||| |||| ||| ||||||||| || ||||||||||| Sbjct 5147 ACATTGTCTCAAATATCTGAATATTGAGACGCTGTGCTTCCTCACTCTCAAATGGATAGC 5088 Query 62749 TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62808 | | ||| || || || || | |||||||||||||| || || || | ||||||| Sbjct 5087 GCATCAAAATGAATGCATCTGCCAGACCTTGAACACCAATTCCAATGGGACGATGTCTCA 5028 Query 62809 TATTAGAGATTTCA---GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62865 | ||||| | || || || |||| || || || || | || || ||||| || | Sbjct 5027 TGTTAGA---TGCACGTGCCTCAGGAACCGGGTAGTAGTTGACCTCAATGATTTTGTTCA 4971 Query 62866 GATT---TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGC-C 62919 | || | |||| ||| | || ||| | ||| || ||||||| | | || Sbjct 4970 GGTTGCGTGTGAC---TACATGAACAACACGCCGCAGCTTCTCAAAATCATAGGTGGCAT 4914 Query 62920 CATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAG 62979 || ||||||||||||| ||||| ||||||||||| ||||| || | |||| | Sbjct 4913 CAGGGCGAACAAACATGTTCAGGGCAACGGATGCCAGATTGCACACAGCAATTTCATCTG 4854 Query 62980 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTT 63039 || || || | |||||||| || || || || ||||| || || || | ||| | Sbjct 4853 CAGAGCTGTACTGAACAATCTCAGTACACAGGTTGCTGCACTTAATGGTACCCACATTCT 4794 Query 63040 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 63099 | || || ||| ||| || ||||| || || | ||||||||||||||||| || | Sbjct 4793 GCTGGTTGGACTTGCGGTTGCAGGCATCTTTGTAGACCATGAATGGAGTACCAGTCTCCA 4734 Query 63100 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCC 63159 ||| | ||| ||||| ||| | || || || ||||| | || Sbjct 4733 CCTGGGCTTCAATAATACTGCGCCACAGCTGGCGTGCAGGAATCTGCTTGTTGTACCGCC 4674 Query 63160 TTTCTCTTTCGTA--TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA 63217 ||| |||| || | ||| | | || ||||| ||||||||||| | |||| Sbjct 4673 CCTCTTTTTCATACTTCTCGTAGAGGGCC--TCAAACTCCTCTCCCCAAACTTCCTCCAG 4616 Query 63218 TCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 63277 | ||||| | | || ||||| | ||||| | ||| ||| ||| || ||| Sbjct 4615 CCCTGGACACTTCTTTGGGCACATGAGTGACCATTGGGAATCAGCCTCCACCCGACGCAT 4556 Query 63278 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 || |||||||| ||||| | ||| ||| || ||||| | | || ||| || || | Sbjct 4555 GAAAAGATCAGGGATCCACAAAGC-ATAGAAAAGATCACGAGCTCGCATTTCTTCCTTCC 4497 Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 |||| ||||| ||| ||||| | | ||| | |||||| || |||| ||| | Sbjct 4496 CTGTGTTCTTGCGAAGGGAAAGGAAGCTGAAGACATCCGCATGCCAAGGCTCCAGGTAGA 4437 Query 63397 TGGCCATAACTCCAGG 63412 | || | ||||||| Sbjct 4436 TTGCGAAGGCTCCAGG 4421 >seq8136 Length=40417 Score = 114 bits (126), Expect = 2e-20 Identities = 509/812 (63%), Gaps = 63/812 (8%) Strand=Plus/Plus Query 33414 CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 33473 ||||| || || || || || || ||||| | | || |||||||| || | | Sbjct 18907 CTATCGGCCACAAACTCAATGTACTGCTTCATGAGCTGGCAGTTCATTCCAATCATGTCC 18966 Query 33474 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAAT 33533 || || || ||| ||| |||||||| || || || | || |||| | ||||| Sbjct 18967 ACGGGTAGTGCCTTAGTCAGAAATTCCTGCTCGATTGTCACGGCATCGGCAATAATCGCA 19026 Query 33534 CTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCG 33593 | || | |||| |||| | | | |||||| ||||| | || || || ||| Sbjct 19027 GTGACTCTCTCTTTCGACGGTTTGTTGACCAGATGTTTGAACATGAGGCAGGCAAAGTCG 19086 Query 33594 CAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGG 33653 ||||| || |||||||| | || || ||||| || || ||||| ||||| | | Sbjct 19087 CAGTGGAGGCCCTCGTCGCGCGAGATCAACTCGTTGCTGAAGGTAAGTCCAGGCATAACG 19146 Query 33654 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACT 33713 |||||||| || ||||| || |||| ||||| ||||| ||||| || ||||| || Sbjct 19147 CCACGCTTCTTCAGCCAGAAGATGGCGGCGAAACTACCGGAGAAGAAAATGCCTTCCACC 19206 Query 33714 GCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG-TCATG---TATCCACTTTTG 33769 |||||||| || || | | || || ||| | ||| |||| ||||||||| | Sbjct 19207 GCAGCAAAAGCGATTACACGTTCGGCA-AACGTGGACTGATCATCCGCTATCCACTTCAG 19265 Query 33770 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG------ 33823 ||||| ||||| || || || |||||||| ||||| || ||||| || || Sbjct 19266 GGCCCAGTCGGCTTTGCGCTTAACGCAAGGCATGGTTTCGATTGCATTGAACAGGAACTC 19325 Query 33824 -------------ATAGttttt---------ttCATTACTATC----------------- 33844 ||| || || || |||| |||| Sbjct 19326 CCTGCAATAATTCATAATTATTAGGTATTCATTGATTAATATCAAATGATAACCAACCTC 19385 Query 33845 ----TTT-------AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 33893 ||| || ||||| || || | | || ||||| ||||| || | ||| Sbjct 19386 TGCGTTTCGTCCGCAATGTAAGTCTCAATTAGCATGCTGTACATCTCCGAGTGGACGTTC 19445 Query 33894 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 33953 || || || | ||| || ||||| || || | ||||| || | ||||| || | Sbjct 19446 TCCATAGCGACCTGGAACCCGTAAAAGCAGCGGGCCTCTGTCACTTGCACCTCCTGCCCG 19505 Query 33954 AATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACA 34013 || | || | | ||| || || || || ||||| ||| || || || || | || Sbjct 19506 AACCTCTCGACCAGATTCTCGTTGACGATCCCATCCGAGGCGGCGAAGAAGGCGAGGACG 19565 Query 34014 TGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGA 34072 || ||| || | ||||| | ||| || || | ||| | || | ||| | || Sbjct 19566 TGGGATATGAAGTGGCGCTCGTC-GTCGTTCAGCTTCTCCCAGTACTTCAGGTCTCTGGA 19624 Query 34073 TATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 34132 | |||||| || ||||| ||||| || || ||||||||||| || ||||| ||| || Sbjct 19625 GAGATCCACCTCCTCCACGGTCCAGAAGGACGCCTCTGCCTTCTTGTACATGGCCCAAAT 19684 Query 34133 GTCATGATATTGGATTGGGAAAATAACAAATC 34164 ||| | |||| ||| ||||| | ||||||| Sbjct 19685 GTCGGGGTATTTGATGGGGAAGACCACAAATC 19716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629298386243280