Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq42356 244 1e-59 >seq42356 Length=8389 Score = 244 bits (270), Expect = 1e-59 Identities = 899/1391 (65%), Gaps = 46/1391 (3%) Strand=Plus/Minus Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGC-GGCTTTCGTACGTAGATAGTACATGC 70849 |||||||| ||| ||||||||||| || || |||||| || | || || ||||||| Sbjct 5803 CTTGTCCACTGTGAACTGAATGGGCTTGGCAGCAGGCTTT-GTCCTCAGGTAATACATGC 5745 Query 70850 CTGTTTTTAGACCGAGAC-TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 ||||||| ||||| || | |||| || || | |||||| | || |||| | Sbjct 5744 CTGTTTTCAGACC-AGCCTTCCACCCATACAGATGCATGGAGCACATCTTCCCATAGGTC 5686 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 || | || ||||| || |||| ||||| || || || ||| | || || | ||| ||| Sbjct 5685 GGCTGTGCAATGTGGATGTTCAGTGACTGGCTCTGGTCAATGTAAGCACCGCGGTCAGCA 5626 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028 ||||| || || | ||||| |||| |||||||| | ||||| || | | ||| | Sbjct 5625 GCCATCTTCATCACAGTCTTCTGTGACATTTCCCACACCGTTTTGTACAATGCCTTTAGG 5566 Query 71029 TCTTCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085 || | ||| | || | | |||||||| |||||||| ||||| ||| || ||| Sbjct 5565 TCGTTTGGGATCCCCTTGATCTGTTGAATGGAGCCACCATCAGCAATGATCTGGTTCTTG 5506 Query 71086 ATCTCTTCA---TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACT 71142 | ||||| |||| | || ||| || | || | || || || | || || Sbjct 5505 A---CTTCAGGGCTCCACAGACCTCGCTCAGTCAGGTCTTTCAGCAGGTGGTGGTTCACG 5449 Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||| || || |||| || | || || | |||| || || | || | Sbjct 5448 ACCTGAAACTCACCGGACAGAACACGGCGGACATACACATTAGAAGTGTAGGCCTCGATA 5389 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC---ACCAAT 71259 |||||||| || || | ||| ||||| |||||||| || ||||| || ||| | |||| Sbjct 5388 GACTCATTGTTCCCAAGAATCTGAGCCGTTGATGCTGTGGGCATTGGAGCCAGGAGCAAT 5329 Query 71260 AGACTATTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAA 71317 || ||| | || ||| || | || ||||| ||||| || | | |||||| ||| | Sbjct 5328 -GA--ATTGCGTAGCCCA--TGCTTGGCAATTTTCTCTTTCAGTGCTGCCCAATCCCACA 5274 Query 71318 GATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGC-GTATGAT 71376 | || | ||| || |||| || || || | | Sbjct 5273 GGTCAGTTGGGGTCACACCCCACAAGTCATACTGAAGCCTGCCCTTGCTGGCAGGACTGC 5214 Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436 ||| | || || || ||||| || | || || || |||||||| || ||||| | ||| Sbjct 5213 CCT-CGTAAGTCTCATATGGACCATACTTCTCAGCAAGTTCACAGCTGGCCTCAAGTGCA 5155 Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAAT 71496 |||| || || || || || |||| |||||||| ||||||||| || |||||| Sbjct 5154 GCATAGTACATTGTCTCAAATATCTGAATATTGAGACGCTGTGCTTCCTCACTCTCAAAT 5095 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTG 71556 ||||| | | ||| || || ||||| | |||||||| ||||| || || || | Sbjct 5094 GGATAGCGCATCAAAATGAATGCATCTGCCAGACCTTGAACACCAATTCCAATGGGACGA 5035 Query 71557 TGTCTCTTATTAGAAATTTCA---GCTTCTGGAATAGGATAATAATTAATATCTATAATT 71613 |||||| | ||||| | || || || |||| || || || || | || || ||| Sbjct 5034 TGTCTCATGTTAGA---TGCACGTGCCTCAGGAACCGGGTAGTAGTTGACCTCAATGATT 4978 Query 71614 TTATTGAGATT---TCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAAT 71670 || || || || | |||| ||| | || ||| | || || ||||||| | Sbjct 4977 TTGTTCAGGTTGCGTGTGAC---TACATGAACAACACGCCGCAGCTTCTCAAAATCATAG 4921 Query 71671 CTCCCATC---TATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACC 71727 | |||| ||||||| ||||| |||||| ||||||||||| || || || | Sbjct 4920 GTGGCATCAGGGCGAACAAACATGTTCAGGGCAACGGATGCCAGATTGCACACAGCAATT 4861 Query 71728 TCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCT 71787 |||| ||| | || || | ||| ||||| || || || || ||||| ||||| || Sbjct 4860 TCATCTGCAGAGCTGTACTGAACAATCTCAGTACACAGGTTGCTGCACTTAATGGTACCC 4801 Query 71788 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCA 71847 | ||| || || || ||| ||| || ||||| || || | || || ||||||||| Sbjct 4800 ACATTCTGCTGGTTGGACTTGCGGTTGCAGGCATCTTTGTAGACCATGAATGGAGTACCA 4741 Query 71848 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTG 71907 || || | ||| | ||| ||||| ||| | || || || || ||| Sbjct 4740 GTCTCCACCTGGGCTTCAATAATACTGCGCCACAGCTGGCGTGCAGGAATCTGCTTGTTG 4681 Query 71908 TATCTCTTTTCTCTTTCGTA-TTGT-GTATATAATCGTTCGAACTCGTCTCCCCAAGCAT 71965 || | | ||| |||| || || | ||| | | || ||||| ||||||||| | | Sbjct 4680 TACCGCCCCTCTTTTTCATACTTCTCGTAGAGGGCC--TCAAACTCCTCTCCCCAAACTT 4623 Query 71966 TGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTC 72025 || | || ||||| | || || ||||| | |||||| | |||| | | || | Sbjct 4622 CCTCCAGCCCTGGACACTTCTTTGGGCACATGAGTGACCATTGGGAATCAGCCTCCACCC 4563 Query 72026 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCC 72084 | ||| || |||||||| ||||| | ||| ||| || ||||| | | || || Sbjct 4562 GACGCATGAAAAGATCAGGGATCCACAAAGC-ATAGAAAAGATCACGAGCTCGCATTTCT 4504 Query 72085 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 72144 || || ||||| ||||| ||| ||||| | | ||| | |||||| || ||| Sbjct 4503 TCCTTCCCTGTGTTCTTGCGAAGGGAAAGGAAGCTGAAGACATCCGCATGCCAAGGCTCC 4444 Query 72145 AAGTATATGGC 72155 | ||| || || Sbjct 4443 AGGTAGATTGC 4433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670585921232760