Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq29144 109 6e-19 seq8136 87.8 2e-12 >seq29144 Length=118640 Score = 109 bits (120), Expect = 6e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| |||||| || || || |||||||||||||||| |||| |||||||| || Sbjct 104474 ATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGGCCATCTTCGAGCTG 104415 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 || ||||| |||| ||||| |||||||| || || ||||| || || || || || Sbjct 104414 CTTGCCAGCGAAGATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTGGATCTT 104355 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 || | | || | ||||| | || || || |||| ||| | |||||||| || Sbjct 104354 GGCCTTGACGTTCTCGATGGTGTCGCTCGGCTCAACCTCAAGAGTGATGGTCTTGCCAGT 104295 Query 143161 CAATGTTTTTACGAATATTTGCATA 143185 ||| || || ||||| || |||||| Sbjct 104294 CAAGGTCTTAACGAAGATCTGCATA 104270 >seq8136 Length=40417 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 50404 ACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGC 50463 || || ||||||||| || | || ||||| || ||||| | || || |||||||| Sbjct 19238 ACGTTTGCCGAACGTGTAATCGCTTTTGCTGCGGTGGAAGGCATTTTCTTCTCCGGTAGT 19179 Query 50464 TTTGCAGCCATATTTTACATTAA-AACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAA 50522 || || ||||| || | | || || | | ||| | ||||| || || || || ||||| Sbjct 19178 TTCGCCGCCATCTTCTGGCTGAAGAAGCGT-GGCGTTATGCCTGGACTTACCTTCAGCAA 19120 Query 50523 CGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTG 50567 ||||||||| ||||||||||| || | ||| |||||||| || Sbjct 19119 CGAGTTGATCTCGCGCGACGAGGGCCTCCACTGCGACTTTGCCTG 19075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506596423666320