Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq8136 163 4e-35 >seq8136 Length=40417 Score = 163 bits (180), Expect = 4e-35 Identities = 255/362 (70%), Gaps = 11/362 (3%) Strand=Plus/Minus Query 125390 GTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 |||||| | || || |||| ||| ||||| | | | || || || || || || Sbjct 19260 GTGGATAGCGGATGATCAGTCCACGTTTGCCGAACGTGTAATCGCTTTTGCTGCGGTGGA 19201 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 ||||| ||||| || |||||||| || |||||||| ||||| |||||||| || | || Sbjct 19200 AGGCATTTTCTTCTCCGGTAGTTTCGCCGCCATCTTCTGGCTGAAGAAGCGTGGCGTTAT 19141 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 ||| ||||| || ||| |||||||| || || || ||||||||||| ||||| ||||| Sbjct 19140 GCCTGGACTTACCTTCAGCAACGAGTTGATCTCGCGCGACGAGGGCCTCCACTGCGACTT 19081 Query 125570 TGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCG-ATGAAAAGG 125628 |||| || |||| ||| ||||| ||| | | || || | || | | Sbjct 19080 TGCCTGCCTCATGTT---CAAACATCTG-GTCAACA------AACCGTCGAAAGAGAGAG 19031 Query 125629 TCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTAC 125688 ||| ||| | |||||||||||| || || || || ||||| || | | |||| Sbjct 19030 TCACTGCGATTATTGCCGATGCCGTGACAATCGAGCAGGAATTTCTGACTAAGGCACTAC 18971 Query 125689 CGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAG 125748 | || ||||||||| ||||||||| |||| ||| ||||||| ||||||||||| | Sbjct 18970 CCGTGGACATGATTGGAATGAACTGCCAGCTCATGAAGCAGTACATTGAGTTTGTGGCCG 18911 Query 125749 AT 125750 || Sbjct 18910 AT 18909 Score = 154 bits (170), Expect = 2e-32 Identities = 222/310 (72%), Gaps = 5/310 (2%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || ||||||| || | |||||||||| |||||||| ||||| |||| ||||| ||| Sbjct 19705 TTCCCCATCAAATACCCCGACATTTGGGCCATGTACAAGAAGGCAGAGGCGTCCTTCTGG 19646 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || || || ||||| ||||| |||| |||||| | | ||||||| | ||| || Sbjct 19645 ACCGTGGAGGAGGTGGATCTCTCCAGAGACCTGAAGTACTGGGAGAAGC---TGAACGAC 19589 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||||| | || ||||| ||| | | |||||||| |||| ||| ||||| |||||| Sbjct 19588 GACGAGCGCCACTTCATATCCCACGTCCTCGCCTTCTTCGCCGCCTCGGATGGGATCGTC 19529 Query 125178 AACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTT 125236 ||||| ||||| || || | | ||| || ||| || | |||||| ||||| Sbjct 19528 AACGAGAATCTGGTCGAGA-GGTTCGGGCAGGAGGTGCAAGTGACAGAGGCCCGCTGCTT 19470 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 |||||| ||||| || || |||||||| |||||||| |||||| | || ||||| Sbjct 19469 TTACGGGTTCCAGGTCGCTATGGAGAACGTCCACTCGGAGATGTACAGCATGCTAATTGA 19410 Query 125297 CATGTACATT 125306 | |||||| Sbjct 19409 GACTTACATT 19400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740448280058760