Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq29144 140 7e-28 seq16489 102 2e-16 seq8136 91.5 3e-13 >seq29144 Length=118640 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| |||||||| ||| || || | || || Sbjct 103940 AGCACCAGATGGAGCGTCGACTCCTTCTGGATATTATAATCACTCAGCGTGCGGCCATCC 103881 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | ||| ||||| || || || || || |||||| Sbjct 103880 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCC 103821 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || ||||| || | ||| |||||||| || ||||| || || || ||| Sbjct 103820 TGAATCTTCGCCTTCACATTCTCGATGGTGTCGCTAGGCTCAACCTCAAGCGTGATGGTC 103761 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| ||||| |||||||| Sbjct 103760 TTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 103729 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || ||||| ||||| || || ||||| ||||| | || || || Sbjct 105163 ACCAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCC 105104 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | || || || || || || || | ||| || || || || || || || |||||||| Sbjct 105103 AACTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTATCCTGG 105044 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||||||||| || || || | ||| |||||||| || || || || ||||| ||||| Sbjct 105043 ATCTTTGCTTTCACGTTCTCAATGGTGTCGCTAGGCTCCACTTCGAGGGTAATGGTCTTG 104984 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| || || |||||||| Sbjct 104983 CCAGTCAGCGTTTTGACGAAGATCTGCAT 104955 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || ||||| ||||| || || ||||| ||||| | || || || Sbjct 104707 ACCAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCC 104648 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | || || ||||| || || || | ||| || || || || || ||||| || || || Sbjct 104647 AACTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 104588 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || || || || | |||||||||||| || ||||| || || || ||||| Sbjct 104587 ATCTTAGCCTTCACGTTCTCAATGGTATCGCTAGGCTCAACCTCGAGAGTGATGGTCTTG 104528 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || |||||||| Sbjct 104527 CCAGTGAGGGTCTTCACGAAGATCTGCAT 104499 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || | || || || || || || ||| Sbjct 104153 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 104094 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || |||||||| ||||| || || Sbjct 104093 GCGAAGATCAGGCGCTGCTGGTCTGGTGGGATCCCCTCCTTATCCTGGATCTTGGCCTTC 104034 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||||||||| || ||||| || || || ||||| || || | || Sbjct 104033 ACATTCTCGATGGTATCGCTAGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTC 103974 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 103973 TTGACGAAGATCTGCAT 103957 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || | ||||| || || || || ||| Sbjct 105607 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGGCCGTCCTCAAGCTGCTTGCCA 105548 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || || || || || || || || ||||| ||||| || || Sbjct 105547 GCGAAGATCAAACGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 105488 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||||||||| || ||||| || || || ||||| ||||| || || Sbjct 105487 ACGTTCTCGATGGTATCGCTAGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGCGTC 105428 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 105427 TTAACGAAGATCTGCAT 105411 >seq16489 Length=130489 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || ||||| || || | || || Sbjct 52087 AGCACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 52146 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| || |||||||||||||| | ||| || || || || || || || || ||| Sbjct 52147 TCCAGTTGCTTCCCAGCAAAAATTAGTCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC 52206 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGT 104526 || ||||| || || ||||| || | || || | ||| || ||||| || || || || Sbjct 52207 TGGATCTTGGCCTTGACATTCTCGATAGTGTC-CGAGGCCTCCACCTCAAGGGTGATGGT 52265 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | || || ||||| |||||||| Sbjct 52266 CTTCCCCGTCAAAGTCTTGACAAAGATCTGCAT 52298 >seq8136 Length=40417 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 ||||| ||||| ||||| ||||| || |||| |||| | || ||||| || | | || Sbjct 19540 GATGGGATCGTCAACGAGAATCTGGTCGAGAGGTTCGGGCAGGAGGTGCAAGTGACAGAG 19481 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 ||| | || |||||||| |||||| | ||||| || || | || || ||||||||||| Sbjct 19480 GCCCGCTGCTTTTACGGGTTCCAGGTCGCTATGGAGAACGTCCACTCGGAGATGTACAGC 19421 Query 268997 CTATTAATAGATACTTATAT 269016 | |||| || ||||| || Sbjct 19420 ATGCTAATTGAGACTTACAT 19401 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200 |||||||| || || ||||| || ||||| || || ||| ||||| ||||| ||| || Sbjct 19217 GCTTTTGCTGCGGTGGAAGGCATTTTCTTCTCCGGTAGTTTCGCCGCCATCTTCTGGCTG 19158 Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAA 269260 ||||| | ||| ||||||| ||| | || ||| ||||| ||||| | ||||| Sbjct 19157 AAGAAGCGTGGCGTTATGCCTGGACTTACCTTCAGCAACGAGTTGATCTCGCGCGACGAG 19098 Query 269261 GGTTTACACTGCGACTTCGCTTG 269283 || | ||||||||||| || || Sbjct 19097 GGCCTCCACTGCGACTTTGCCTG 19075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150425471590308