Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3309 95.1 6e-15 seq29606 87.8 9e-13 seq29550 87.8 9e-13 seq13807 84.2 1e-11 seq26899 82.4 4e-11 seq22465 82.4 4e-11 seq6384 82.4 4e-11 >seq3309 Length=66018 Score = 95.1 bits (104), Expect = 6e-15 Identities = 80/96 (83%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCC--ATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||||| |||||| | |||||||| ||| || ||||||| ||||||||||||||| Sbjct 13994 AATTAAAGAAAAAT-AGATTGGCCCGCATGG--GGGTCGAACCCACGACCTTCGCGTTAT 14050 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||||||||||| |||||| Sbjct 14051 CAGCACGACGCTCTAGCCAACTGAGCTAACGGGCCG 14086 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| ||||||||||||| ||| Sbjct 13335 GGGTCGAACCCACGACCTTCGCGTTATCAGCACGACGCTCTAGCCAACTGAGCTAACGGG 13276 Query 11528 CC 11529 || Sbjct 13275 CC 13274 >seq29606 Length=63489 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||| Sbjct 61762 GGGTCGAACCCACGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACGGG 61821 Query 11528 CC 11529 || Sbjct 61822 CC 61823 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||| Sbjct 62368 GGGTCGAACCCACGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACGGG 62309 Query 11528 CC 11529 || Sbjct 62308 CC 62307 >seq29550 Length=421248 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||| Sbjct 210710 GGGTCGAACCCACGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACGGG 210651 Query 11528 CC 11529 || Sbjct 210650 CC 210649 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| ||||||||||||| ||| Sbjct 211818 GGGTCGAACCCACGACCTTCGCGTTATCAGCACGACGCTCTAGCCAACTGAGCTAACGGG 211759 Query 11528 CC 11529 || Sbjct 211758 CC 211757 >seq13807 Length=167350 Score = 84.2 bits (92), Expect = 1e-11 Identities = 82/103 (80%), Gaps = 9/103 (9%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCC--ATGAAAGGATCGAACCTTCGACCTT 11486 |||||| | | || |||||| | ||||||| ||| || ||||||| ||||||| Sbjct 21023 AAATATTGGA--AAGAAAAAAGC---TTGGCCCGCATGG--GGTTCGAACCCACGACCTT 21075 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||| ||||||||||||| ||||| Sbjct 21076 CGCGTTATCAGCACGACGCTCTAGCCAACTGAGCTAACGGGCC 21118 >seq26899 Length=1100 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| ||||||||||||| ||| Sbjct 997 GGGTCGAACCCACGACCTTCGCGTTATCAGCACGACGCTCTAGCCAACTGAGCTAACGGG 938 Query 11528 CC 11529 || Sbjct 937 CC 936 >seq22465 Length=13988 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| ||||||||||||||| ||||||||||||| ||||||||||||| ||| Sbjct 2835 GGGTCGAACCCACGACCTTCGCGTTATCAGCACGACGCTCTAGCCAACTGAGCTAACGGG 2894 Query 11528 CC 11529 || Sbjct 2895 CC 2896 >seq6384 Length=151253 Score = 82.4 bits (90), Expect = 4e-11 Identities = 74/92 (80%), Gaps = 4/92 (4%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCC--ATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||| |||| | || ||||||| ||| || ||||||| |||||| |||||||| || Sbjct 21834 TAAAAAAAGACCATTTTGGCCCGCATGG--GGGTCGAACCCACGACCTCCGCGTTATCAG 21777 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||| |||||||||||||| ||||| Sbjct 21776 CACGGCGCTCTAACCAACTGAGCTAACGGGCC 21745 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261281019175276