Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq28487 125 5e-24 seq29144 102 5e-17 >seq28487 Length=147086 Score = 125 bits (138), Expect = 5e-24 Identities = 199/283 (70%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 ||||| || || ||||| ||||| || || ||||||||||||||||| ||| |||||| Sbjct 134793 CCGACCAAGTACTTCGGATGCGAGCTCGGTGCTCAGACGCAGTTTGACTTCAAGAACGAG 134852 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 || ||| | || ||||| || || | | | |||||||| | || ||||| || Sbjct 134853 CGGTTCGTGGTGAACGGCAGCCACGACGCGGACCGCCTGCAGGAGCTTCTCGACGGGTTC 134912 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCT 6500 ||||||||||| || ||||| | ||| ||||| ||||| ||||| | ||| ||| Sbjct 134913 ATTCGCAAGTTCGTCCTGTGCCCGGAGTGCGACAACCCCGAGACGGTGCTGCACGTGCAG 134972 Query 6501 ACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTGGAT 6560 ||||| || | |||| ||| |||||| || ||||| || ||| ||| || Sbjct 134973 TCCAAGCGAGGCCAGGTCTCGCAGTCCTGCAAGGCCTGCGGGCACTCCTGCACGCTCGA- 135031 Query 6561 TTATC-ACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 ||| ||||| ||| |||||| | || ||||| || ||| Sbjct 135032 CCATCGCCACAAGCTCCTCACCTTTGTCCTTAAGAACCCACCA 135074 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 6161 GATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCC 6220 ||||| ||| || || || ||| ||| ||||||||| |||||||||||| ||||| Sbjct 134571 GATGGCCACCTACAATGTGAACCGTGGGGTGACGGACGCGTACTACCGCTACAAGATGCC 134630 Query 6221 GCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACAT 6280 || || |||||||| || || ||||| ||||| || || |||||||| |||||||| Sbjct 134631 TCGTCTCGTGGCCAAGGTGGAAGGGAAGGGCAACGGGATCAAGACCGTCATCGTCAACAT 134690 Query 6281 GCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCAC 6316 | || || || ||||||||||| | ||| |||| Sbjct 134691 GGTCGACGTTGCCAAGGCGCTCGGGAGGCCTCCCAC 134726 >seq29144 Length=118640 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||||| ||||| ||| || || |||||| || ||||| |||||| Sbjct 103957 TACCACCACGCAGACGCAGCACCAGATGGAGCGTCGACTCCTTCTGGATATTATAATCAC 103898 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || || | || || | || || ||||| || || || || || ||||| | || Sbjct 103897 TCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGG 103838 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| || || ||| ||| || ||||||||||| || || || | | |||| Sbjct 103837 GAATGCCCTCCTTATCCTGAATCTTCGCCTTCACATTCTCGATGGTGTCGCTAGGCTCAA 103778 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| ||||||||| || |||||||| Sbjct 103777 CCTCAAGCGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 103729 Score = 82.4 bits (90), Expect = 5e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 38093 ACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAA 38152 |||||| | |||| |||||| ||||| || |||||| || || ||||| || || Sbjct 104181 ACCTCTGAGTCGCAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAG 104122 Query 38153 AACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGAC 38212 || | || || | || || || || || || ||||| || || || | |||| Sbjct 104121 GGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCTGGTGGGAT 104062 Query 38213 GCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTC 38272 || || || ||| || || ||||||||||| || ||||| | | ||||| || Sbjct 104061 CCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGCTAGGCTCAACCTC 104002 Query 38273 TAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || |||||||| || ||||| |||||||| Sbjct 104001 AAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 103957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334677976872281