Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq8136 141 1e-28 seq36578 109 6e-19 seq5820 100 3e-16 seq64407 98.7 1e-15 seq1737 84.2 2e-11 seq49304 82.4 8e-11 >seq8136 Length=40417 Score = 141 bits (156), Expect = 1e-28 Identities = 284/416 (68%), Gaps = 4/416 (1%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 ||||| || ||||| || |||||||| ||| | | || |||||||| | | Sbjct 18907 CTATCGGCCACAAACTCAATGTACTGCTTCATGAGCTGGCAGTTCATTCCAATCATGTCC 18966 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || ||||| || | |||| || || | ||||||| ||||| || | || | Sbjct 18967 ACGGGTAGTGCCTTAGTCAGAAATTCCTGCTCGATTGTCACGGCATCGGCAATAATCGCA 19026 Query 93044 ATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTC 93102 | ||||| || ||| | ||||| | || | || ||| |||| | ||| |||||||| Sbjct 19027 GTGACTCT-CTCTTTCGACGGTTTGTTGACCAGATGTTTGAACATGAGGCAGGCAAAGTC 19085 Query 93103 GGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAG 93162 | || | || ||||| || || |||||||| |||||||| || | || || | | Sbjct 19086 GCAGTGGAGGCCCTCGTCGCGCGAGATCAACTCGTTGCTGAAGGTAAGTCCAGGCATAAC 19145 Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222 || || ||||| ||||| || || | || |||||||| || || || || |||||||| Sbjct 19146 GCCACGCTTCTTCAGCCAGAAGATGGCGGCGAAACTACCGGAGAAGAAAATGCCTTCCAC 19205 Query 93223 GGCTGCAAATGCCACAATACGTTCGGCAAAATTTG-CGGAATTACTGCTGATCCATTTTA 93281 || ||||| || | | |||||||||||| | | | || | ||| ||||| || | Sbjct 19206 CGCAGCAAAAGCGATTACACGTTCGGCAAACGTGGACTGATCATCCGCT-ATCCACTTCA 19264 Query 93282 AAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 ||||| |||||||| ||||| ||||| | |||||||| || || || ||| Sbjct 19265 GGGCCCAGTCGGCTTTGCGCTTAACGCAAGGCATGGTTTCGATTGCATTGAACAGG 19320 >seq36578 Length=9611 Score = 109 bits (120), Expect = 6e-19 Identities = 79/89 (89%), Gaps = 7/89 (8%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG--- 126321 |||||||||||||||||||| |||||||||||| |||||||||||| ||||| || Sbjct 8936 AGTCAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGT--CCTCGTAAGAGG 8880 Query 126322 -CGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||||| Sbjct 8879 GCGTGGGTTCGAACCCCACACCTGACAAA 8851 >seq5820 Length=2277 Score = 100 bits (110), Expect = 3e-16 Identities = 82/97 (85%), Gaps = 7/97 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG--- 126321 |||||||||||||||||||| |||||||||||| |||||||||||| ||||| || Sbjct 913 AGTCAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGT--CCTCGTAAGAGG 969 Query 126322 -CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||| ||| |||||||||| || || || Sbjct 970 TCGTGGGTTCGAATCCCGCACCTGACAAGTTTTTTTT 1006 >seq64407 Length=6710 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/96 (84%), Gaps = 7/96 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG---- 126321 ||||||||||||||||||| |||||||||||| ||||| |||||| ||||| ||| Sbjct 6667 GTCAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGTTCTGGT--CCTCGTGAGAGGT 6611 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||| ||| ||||||||||| | || || Sbjct 6610 CGTGGGTTCGAATCCCGCACCTGACAAACTTTTTTT 6575 >seq1737 Length=50534 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/91 (81%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 162736 aaaaaaaTCAGAATTACCTCTTGTGAGAATCGAACTCACGACAACCGGCGTATAAGACCG 162795 |||||||| || || |||| ||||||| ||||||||||||| | || || ||||| Sbjct 31449 AAAAAAATTCGA-TTGCCTCCTGTGAGAGTCGAACTCACGACCCCTGGTTTACGAGACCA 31507 Query 162796 ATGCTCTAACCACTGAGCTAAAGAGGCTACA 162826 |||||||||||||||||||| |||||| || Sbjct 31508 GTGCTCTAACCACTGAGCTAAGGAGGCTTCA 31538 >seq49304 Length=58595 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| |||||||| |||||||||||||||| | ||| |||||| ||||| || Sbjct 21031 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 20974 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 20973 GCGTGGGTTCAAATCCCACTTCTGACA 20947 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| |||||||| |||||||||||||||| | ||| |||||| ||||| || Sbjct 21881 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 21824 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 21823 GCGTGGGTTCAAATCCCACTTCTGACA 21797 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| |||||||| |||||||||||||||| | ||| |||||| ||||| || Sbjct 22273 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 22330 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 22331 GCGTGGGTTCAAATCCCACTTCTGACA 22357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556401730917240