Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq29144 170 4e-37 seq8136 109 1e-18 seq19168 107 4e-18 seq42356 104 4e-17 >seq29144 Length=118640 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | | |||| || ||||||||||| || |||||||| || ||| Sbjct 105409 CCGCCACGAAGCCTGAGCACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTC 105350 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || || | || ||||| || ||| Sbjct 105349 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGAGGA 105290 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || ||||||||||| || ||||| ||||| || |||||||||||| ||| | || || Sbjct 105289 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTGTC-GCTAGGCTCAAC 105231 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| ||||| ||||||||||| ||||| || ||||| Sbjct 105230 CTCCAACGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 105183 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| | ||| |||| || || || || || || |||||||| || ||| Sbjct 104725 CCGCCGCGAAGTCTCAACACCAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCGCTC 104666 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || |||||||| || ||||| || || | || ||||| || ||| Sbjct 104665 AGAGTGCGGCCATCCTCCAACTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCTGGGGGA 104606 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||||||||||||||| ||||| ||||| ||| ||| ||||| || ||| | || || Sbjct 104605 ATGCCTTCCTTGTCTTGGATCTTAGCCTTCACGTTCTCAATGGTATC-GCTAGGCTCAAC 104547 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||||||||| ||||| |||||||| Sbjct 104546 CTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 104499 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || || ||||| || |||||||| || ||| Sbjct 105865 CCGCCACGCAGGCGCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 105806 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| ||||| Sbjct 105805 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGTGGG 105746 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| ||||| || |||||||||||| | | || || Sbjct 105745 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGGAAGGCTCGACC 105686 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || || |||||||| ||||| |||||||| Sbjct 105685 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 105639 Score = 156 bits (172), Expect = 8e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||||| || || ||||| || |||||||| || ||| Sbjct 105637 CCACCACGCAGGCGAAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 105578 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || | | || ||||||||||| Sbjct 105577 AGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGTGGG 105518 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||||||| ||||||||| || ||| | || || Sbjct 105517 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATC-GCTAGGCTCAAC 105459 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || || || ||||| ||||| |||||||| Sbjct 105458 CTCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTAACGAAGATCTGCAT 105411 Score = 147 bits (162), Expect = 4e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | | |||| || || || ||||| || |||||||| |||||| Sbjct 104497 CCGCCACGAAGCCTGAGCACCAGATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGCTC 104438 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| ||||| | || || || || ||| Sbjct 104437 AGGGTGCGGCCATCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGGGGA 104378 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| ||||| || || ||||| ||||||||| |||||||||||| ||| | || || Sbjct 104377 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTCGGCTCAAC 104319 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || | |||||| ||||| |||||||| Sbjct 104318 CTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATCTGCAT 104271 Score = 147 bits (162), Expect = 4e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| ||||| || || || ||||| || ||||| || || ||| Sbjct 104953 CCACCACGGAGACGCAGGACCAAATGCAGGGTCGACTCCTTCTGGATATTGTAGTCGCTC 104894 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || ||||| || ||| Sbjct 104893 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGAGGA 104834 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || ||||||||||| || ||||| ||||| ||| ||| |||||||| ||| | || || Sbjct 104833 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC-GCTAGGCTCAAC 104775 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||||||||| ||||| || ||||| Sbjct 104774 CTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 104727 Score = 145 bits (160), Expect = 1e-29 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||||||| ||||| ||||| || |||||||| || ||| || || | Sbjct 104174 AGTCGCAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGG 104115 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| || ||||| || || | || ||||| ||||| || || ||| Sbjct 104114 CCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCTGGTGGGATCCCCTCC 104055 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 || || || ||||| ||||| || ||||||||| || ||| | || || || | ||| Sbjct 104054 TTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATC-GCTAGGCTCAACCTCAAGGGT 103996 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || | |||||||||||| |||||||| Sbjct 103995 GATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 103957 Score = 143 bits (158), Expect = 5e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| || ||||| ||||| || ||||| |||||||| Sbjct 103955 CCACCACGCAGACGCAGCACCAGATGGAGCGTCGACTCCTTCTGGATATTATAATCACTC 103896 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| ||||| | || || || || ||| Sbjct 103895 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 103836 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| ||||| || |||||||| ||||| || |||||||||||| ||| | || || Sbjct 103835 ATGCCCTCCTTATCCTGAATCTTCGCCTTCACATTCTCGATGGTGTC-GCTAGGCTCAAC 103777 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || ||||| || || || |||||||| Sbjct 103776 CTCAAGCGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 103729 >seq8136 Length=40417 Score = 109 bits (120), Expect = 1e-18 Identities = 142/193 (74%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 10622 CAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAA 10681 ||| ||||| | || || ||||| | | || |||||| |||||| ||| ||||| Sbjct 19517 CAGATTCTCGTTGACGATCCCATCCGAGGCGGCGAAGAAGGCGAGGACGTGGGATATGAA 19576 Query 10682 GTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATC-CTGGTTGAGCTGGA 10740 ||||||||| || |||||||| || || ||||| || || |||| ||| | | Sbjct 19577 GTGGCGCTCGTCGTCGTTCAGCTTCTC---CCAGTACTTCAGGTCTCTGGA-GAGATCCA 19632 Query 10741 CCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGT 10800 ||||||||||||||||||| | || | |||||||||||||| |||||||||||| Sbjct 19633 CCTCCTCCACGGTCCAGAAGGACGCCTCTGCCTTCTTGTACATGGCCCAAATGTCGGGGT 19692 Query 10801 ACCGGATGGGGAA 10813 | ||||||||| Sbjct 19693 ATTTGATGGGGAA 19705 >seq19168 Length=20381 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 268373 TTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTG 268432 |||||||||||||| |||||||||| | || || ||||| ||||| || |||||||| Sbjct 1276 TTTCGGGTCACGAAGTTCTCGCCACGACGTGGACTTTCGTGATTGAACAGTATGCCGTTA 1217 Query 268433 CACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTT 268491 || |||||||| ||||| || || | |||||| ||| ||||||| ||||||| ||| Sbjct 1216 CAGGCGAACATCCCATAGGCTTCCCTGTAGTTAGTGACGATCCAGTAGGCAAACAGCTT 1158 >seq42356 Length=8389 Score = 104 bits (114), Expect = 4e-17 Identities = 290/444 (65%), Gaps = 6/444 (1%) Strand=Plus/Minus Query 30794 AATGGCGTTTGCAGCAGGCTTGCTTCTGCAGTAATACATAAGCGTCTTGAGACCCTTCTT 30853 ||||| || ||||||||||| | || ||||||||| || || ||||| ||| Sbjct 5785 AATGGGCTTGGCAGCAGGCTTTGTCCTCAGGTAATACATGCCTGTTTTCAGACCAGCCTT 5726 Query 30854 CCATGCATAGAACAGCATGGAAGACATTGACTTCATAGAGGGCGC---TGCAACGAAGAG 30910 ||| |||| | ||||||| |||| |||| | ||| || ||||| | || Sbjct 5725 CCACCCATACAGATGCATGGAGCACAT---CTTCCCATAGGTCGGCTGTGCAATGTGGAT 5669 Query 30911 GTTCATGCTCTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGCAAGGTCAATGACGGT 30970 ||||| ||| ||||||||| | | ||||||||| || || | | || || || Sbjct 5668 GTTCAGTGACTGGCTCTGGTCAATGTAAGCACCGCGGTCAGCAGCCATCTTCATCACAGT 5609 Query 30971 CTTCATAGACAGCTCCCATGCGGTCTTGTAGATTGCCTTGAGCTCAGGGTGGATGCCAAT 31030 |||| |||| ||||| | || ||||| | |||||| || || |||| || | Sbjct 5608 CTTCTGTGACATTTCCCACACCGTTTTGTACAATGCCTTTAGGTCGTTTGGGATCCCCTT 5549 Query 31031 GACACGTTGGATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACGT 31090 || |||| ||||| || || | ||||| ||||||||||| | | | |||| Sbjct 5548 GATCTGTTGAATGGAGCCACCATCAGCAATGATCTGGTTCTTGACTTCAGGGCTCCACAG 5489 Query 31091 GCCACGAGCGATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAAG 31150 || || | | ||||| || |||| || ||| || || | ||||| || | || Sbjct 5488 ACCTCGCTCAGTCAGGTCTTTCAGCAGGTGGTGGTTCACGACCTGAAACTCACCGGACAG 5429 Query 31151 GGTCCGGCGGCTGTACAGATTAGAAGTGATCGGCTCCATAGCCTCTACGGACCCGCAGAT 31210 |||||| |||| |||||||||| | ||| |||| ||| | ||| || Sbjct 5428 AACACGGCGGACATACACATTAGAAGTGTAGGCCTCGATAGACTCATTGTTCCCAAGAAT 5369 Query 31211 TTGCGCGGTGGATGCGGTGGGCAT 31234 || || || ||||| |||||||| Sbjct 5368 CTGAGCCGTTGATGCTGTGGGCAT 5345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920862626013720