Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq29144 140 3e-28 seq16489 104 2e-17 seq8136 87.8 2e-12 >seq29144 Length=118640 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| ||| | ||| ||||| || || ||||| ||||| | | Sbjct 103955 CCACCACGCAGACGCAGCACCAGATGGAGCGTCGACTCCTTCTGGATATTATAATCACTC 103896 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| |||| | ||||||||||| || || Sbjct 103895 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGA 103836 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| || ||| ||| | | |||| |||||| || ||| || Sbjct 103835 ATGCCCTCCTTATCCTGAATCTTCGCCTTCACATTCTCGATGGTGTCGCTAGGCTCAACC 103776 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| ||||| ||||| |||||||||||||| Sbjct 103775 TCAAGCGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 103729 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| |||| | Sbjct 105637 CCACCACGCAGGCGAAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 105578 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || |||||| ||||||| |||||||| ||||| || Sbjct 105577 AGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGTGGG 105518 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| ||| || || ||| || Sbjct 105517 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGCTAGGCTCAACC 105458 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| ||||| || || || || |||||||| Sbjct 105457 TCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTAACGAAGATCTGCAT 105411 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| ||| | |||||||| || || || |||||||||| || ||||| ||| || Sbjct 104480 CACCAGATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGGCCATCTTC 104421 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || |||||| |||| | ||||||||||| || || ||||||||||| ||| Sbjct 104420 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTG 104361 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | |||| |||||| | ||| || || | || | || || Sbjct 104360 GATCTTGGCCTTGACGTTCTCGATGGTGTCGCTCGGCTCAACCTCAAGAGTGATGGTCTT 104301 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| |||| || || || || |||||||| Sbjct 104300 GCCAGTCAAGGTCTTAACGAAGATCTGCAT 104271 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||||| || || || ||||| |||| || ||||| Sbjct 105853 CGCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCG 105794 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| |||||||| || || || || || |||||| Sbjct 105793 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGTGGGATCCCTTCCTTG 105734 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | |||| |||||| | | |||||| || | ||| | Sbjct 105733 TCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGGAAGGCTCGACCTCCAGGGTGATG 105674 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || |||||||| Sbjct 105673 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 105639 >seq16489 Length=130489 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||| | ||| | || ||||| || || || ||||| ||| Sbjct 52069 GCCCCACCTCGGAGGCGGAGCACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 52128 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || ||||| ||| || || || || ||||| | || | ||||||||| || || Sbjct 52129 CTCAGGGTGCGGCCATCCTCCAGTTGCTTCCCAGCAAAAATTAGTCGCTGCTGGTCTGGG 52188 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||||||||||| ||| || ||||| | |||| ||||||| ||| Sbjct 52189 GGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATAGTGTCCGAGGCCTCC 52248 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | || || || |||| ||| || ||||| |||||||| Sbjct 52249 ACCTCAAGGGTGATGGTCTTCCCCGTCAAAGTCTTGACAAAGATCTGCAT 52298 >seq8136 Length=40417 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 47502 GAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAG 47561 || ||||| || || || ||| | |||| ||||| ||||||||||| |||||||||||| Sbjct 18811 GAAAATCCGTTTGACTTCATGGAACACATCTCGCTAGAGGGCAAGACGAACTTTTTCGAG 18752 Query 47562 AAGCGCGTCGGCGAATAT 47579 ||||| |||||||||||| Sbjct 18751 AAGCGAGTCGGCGAATAT 18734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475108803084240