Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq42356 114 1e-20 >seq42356 Length=8389 Score = 114 bits (126), Expect = 1e-20 Identities = 485/771 (63%), Gaps = 5/771 (1%) Strand=Plus/Minus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || ||||| || |||| ||| || || || | ||||| | | |||||||| || Sbjct 5802 TTGTCCACTGTGAACTGAATGGGCTTGGCAGCAGGCTTTGTCCTCAGGTAATACATGCCT 5743 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAAT-TTAGAATAACTAGG 47092 || || | ||| |||| ||||| | |||||| || || || ||| | || Sbjct 5742 GTTTTCAGACCAGCCTTCCACCCATACAGATGCATGG-AGCACATCTTCCCATAGGTCGG 5684 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 | || ||| || || || || || || ||||| ||||| | ||||| | ||||| || Sbjct 5683 CTGTGCAATGTGGATGTTCAGTGACTGGCTCTGGTCAATGTAAGCACCGCGGTCAGCAGC 5624 Query 47153 CATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212 ||| | | | | | | |||| || ||||| || ||||| || | | || | ||| Sbjct 5623 CATCTTCATCACAGTCTTCTGTGACATTTCCCACACCGTTTTGTACAATGCCTTTAGGTC 5564 Query 47213 TTCTGGGAGA---TTAGTATTTTGAATAGATCCTCCgttttctataattttgttttttaa 47269 | ||||| || | | |||||| || || || | | || || | ||| || | Sbjct 5563 GTTTGGGATCCCCTTGATCTGTTGAATGGAGCCACCATCAGCAATGATCTGGTTCTTGAC 5504 Query 47270 ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329 |||| ||| || ||| ||||| | ||| | || || | || || | || Sbjct 5503 TTCAGGGCTCCACAGACCTCGCTCAGTCAGGTCTTTCAGCAGGTGGTGGTTCACGACCTG 5444 Query 47330 AAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTC 47389 ||| || || || || || | ||| ||| | |||| || || | || ||||| || Sbjct 5443 AAACTCACCGGACAGAACACGGCGGACATACACATTAGAAGTGTAGGCCTCGATAGACTC 5384 Query 47390 ATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATT 47449 ||| || |||| ||| ||||| ||||||||||| ||||| | || | | || ||| Sbjct 5383 ATTGTTCCCAAGAATCTGAGCCGTTGATGCTGTGGGCATTGGAGCCAGGAGCAATGAATT 5324 Query 47450 TCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGG 47509 | || |||| || || | | ||||||||| || || | ||| Sbjct 5323 GCGTAGCCCATGCTTGGCAATTTTCTCTTTCAGTGCTGCCCAATCCCACAGGTCAGTTGG 5264 Query 47510 AACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGT 47569 ||| ||| || ||||| ||||| | || || || ||| || | || || Sbjct 5263 GGTCACACCCCACAAGTCATACTGAAGCCTGCCCTTGCTGGCAGGACTGCCCTCGTAAGT 5204 Query 47570 TTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATAT 47629 | ||| ||||| || | ||| |||||||| || || || | |||| ||| || || Sbjct 5203 CTCATATGGACCATACTTCTCAGCAAGTTCACAGCTGGCCTCAAGTGCAGCATAGTACAT 5144 Query 47630 TGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNN 47689 ||| |||||||| | || || ||| | |||||| ||||| ||||| Sbjct 5143 TGTCTCAAATATCTGAATATTGAGACGCTGTGCTTCCTCACTCTCAAATGGATAGCGCAT 5084 Query 47690 NNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATG 47740 |||| |||||||| |||||||||||||| ||||| || | ||| Sbjct 5083 CAAAATGAATGCATCTGCCAGACCTTGAACACCAATTCCAATGGGACGATG 5033 Score = 102 bits (112), Expect = 9e-17 Identities = 251/379 (66%), Gaps = 4/379 (1%) Strand=Plus/Minus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 ||||| |||||||| || | |||||||||||| | ||| | || | ||||| || ||| Sbjct 4018 TTATTTCCTCCTTGGTCAACATATCTGGCAGTGTCGTTGAAGACCCGCAACATGGGAACA 3959 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATTAC 48471 | ||||| ||| | ||||| || || | |||||| | || | || || || | | Sbjct 3958 AGGCCATTGGATGTCCCATTAGTCCCTGCAATATATGTCCCGGTGGCCCTGATGCAATGG 3899 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 |||| | || || || ||||| | || || ||||||||| | | || || | Sbjct 3898 ACATTG--ACTCCAATCCCTCCTGCTGACTGCGAGATAAGAGCACACTGCATCAGTGTTT 3841 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCG 48591 ||||||||||| || || |||||| ||| | | || || || || | ||| | Sbjct 3840 CATAAATTCCTAGAATGCTGTCATCTCGCATGGTGAGAAGGAAGCAGGAGGAGAGTTGAG 3781 Query 48592 GATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATA 48651 | | | || || | ||| || | || || || ||||| | ||||| ||||| || | Sbjct 3780 GCTTAGGGGTGCCAGCATTGAAGAGAGTGGGGGAAGCATGGGTGAACCACTTCTCAGAGA 3721 Query 48652 ACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACAC 48711 || || ||||| || ||||| | | | | ||| | || || || | || |||| Sbjct 3720 GCAGATTGTATGTCTCGATAACTGCAGCAACATCATCTCCGTGGATGCCAACTGACACAC 3661 Query 48712 GCATTAACATATATTGAGG 48730 |||| | ||| | |||||| Sbjct 3660 GCATCAGCATGTGTTGAGG 3642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561645404531640