Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq42356 100 5e-16 seq8136 89.7 1e-12 >seq42356 Length=8389 Score = 100 bits (110), Expect = 5e-16 Identities = 372/574 (65%), Gaps = 28/574 (5%) Strand=Plus/Minus Query 221510 TCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCT 221569 || ||||| || || || || || || ||||| | |||||| |||| || || || Sbjct 5070 TCTGCCAGACCTTGAACACCAATTCCAATGGGACGATGTCTCATGTTAGATGCACGTGCC 5011 Query 221570 TCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTA 221629 || || || || || ||||||| || || | ||||| ||||| | |||| || | | Sbjct 5010 TCAGGAACCGGGTAGTAGTTGACCTCAATGATTTTGTTCAGGTTGCGTGTGACTACATGA 4951 Query 221630 ACCAC-CTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTC 221688 || || | | | |||||||| || | || | | | | || || | Sbjct 4950 ACAACACGCCG-CAGCTTCTC-------AAAATCA--TAGGTGGCATCAGGGCGA----- 4906 Query 221689 CACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGT 221748 ||||| ||| ||||||||| ||||| || ||||| || | || || | | Sbjct 4905 -ACAAACATGTTCAGGGCAACGGATGCCAGATTGCACACAGCAATTTCATCTGCAGAGCT 4847 Query 221749 ATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATT 221808 ||||| | ||||| ||||| |||||||||||||| ||||| |||| | | || || Sbjct 4846 GTACTGAACAATCTCAGTACACAGGTTGCTGCACTTAATGGTACCCACATTCTGCTGGTT 4787 Query 221809 AGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGC 221868 |||||||| ||| || || ||||||| ||| || ||| |||||||||| ||| || Sbjct 4786 GGACTTGCGGTTGCAGGCATCTTTGTAGACCATGAATGGAGTACCAGTCTCCACCTGGGC 4727 Query 221869 CACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCA-CCGTCCTCTTGACTGCACCCTCGG 221927 | | ||| || ||| || |||||| || || |||| || ||| | Sbjct 4726 TTCAATAATACTGCGCCACAG----CTGGCGTGCAGGAATCTGCTTG-TTGTACCGCCCC 4672 Query 221928 TC-TTTTCATAC--CCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGC 221984 || ||||||||| | ||| || || ||||||| || || | | || ||||| | Sbjct 4671 TCTTTTTCATACTTCTCGTAGAGGGC--CTCAAACTCCTCTCCCCAAACTTCCTCCAGCC 4614 Query 221985 CTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGA 222044 |||||||| | || ||||| || ||| || | | | |||| |||||| Sbjct 4613 CTGGACACTTCTTTGGGCACATGAGTGACCATTGGGAATCAGCCTCCACCCGACGCATGA 4554 Query 222045 AGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 | || || |||||||||| || | || ||||| Sbjct 4553 AAAGATCAGGGATCCACAAAGCATAGAAAAGATC 4520 >seq8136 Length=40417 Score = 89.7 bits (98), Expect = 1e-12 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 25867 ACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCG 25926 ||||||| ||| || | | || |||||||| ||||| ||||| || ||| |||| Sbjct 19238 ACGTTTGCCGAACGTGTAATCGCTTTTGCTGCGGTGGAAGGCATTTTCTTCTCCGGTAGT 19179 Query 25927 TTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAAC 25986 || || |||||||||||||| ||| || || ||||| || || ||| |||| Sbjct 19178 TTCGCCGCCATCTTCTGGCTGAAGAAGCGTGGCGTTATGCCTGGACTTACCTTCAGCAAC 19119 Query 25987 GAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 ||| | ||| | |||||||| |||||| | || ||||||||||| Sbjct 19118 GAGTTGATCTCGCGCGACGAGGGCCTCCACTGCGACTTTGCCTGCCT 19072 Score = 84.2 bits (92), Expect = 4e-11 Identities = 199/297 (67%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || |||| |||||||||||||| | || |||||||| || ||| | ||| Sbjct 19687 GACATTTGGGCCATGTACAAGAAGGCAGAGGCGTCCTTCTGGACCGTGGAGGAGGTGGAT 19628 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| ||| || | |||| | || | | ||||||| || || | Sbjct 19627 CTCTCCAGAGACCTGAAGTACTGGGAGAAGCTGAACGACGACGAGCGCCACTTCATATCC 19568 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| ||||| || || |||||||||||| |||||| Sbjct 19567 CACGTCCTCGCCTTCTTCGCCGCCTCGGATGGGATCGTCAACGAGAATCTGGTCGAGAGG 19508 Query 25654 TTCACCAGGGAAGTGC-AGT-ACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 ||| ||| |||| ||| || |||||| || || ||||| |||||| | || | Sbjct 19507 TTCGGGCAGGAGGTGCAAGTGAC--AGAGGCCCGCTGCTTTTACGGGTTCCAGGTCGCTA 19450 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACG 25768 | || || || ||||| ||| |||| || ||| | ||| |||||| | |||| Sbjct 19449 TGGAGAACGTCCACTCGGAGATGTACAGCATGCTAATTGAGACTTACATTGCGGACG 19393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928079071957440