Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq42356 129 7e-25 seq1046 93.3 5e-14 >seq42356 Length=8389 Score = 129 bits (142), Expect = 7e-25 Identities = 536/839 (64%), Gaps = 19/839 (2%) Strand=Plus/Plus Query 75597 CCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGAC 75656 || |||| ||||| |||| || |||||||| ||| || | |||||| | || Sbjct 4428 CCTTCGCAATCTACCTGGAGCCTTGGCATGCGGATGTCTTCAGCTTCCTTTCCCTTCGCA 4487 Query 75657 TCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAG 75716 ||| ||| | ||||| || | | ||||| || | | ||||||| || | Sbjct 4488 AGAACACAGGGAAGGAAGAAATGCGAGCTCGTGATCTTTTCTATGCTTTGTGGATCCCTG 4547 Query 75717 ACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGG 75776 | ||||||||| ||||| |||| | | |||||||| || | || ||| | ||| Sbjct 4548 ATCTTTTCATGCGTCGGGTGGAGGCTGATTCCCAATGGTCACTCATGTGCCCAAAGAAGT 4607 Query 75777 CACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAG 75836 ||||| || || | ||| ||||||||||| ||||||||| ||||||||| Sbjct 4608 GTCCAGGGCTGGAGGAAGTTTGGGGAGAGGAGTTTGAGGCCCTCTACGAGAAGTATGAAA 4667 Query 75837 AGGAGGGTAGAGCCAATGCGACTGTACCAGC-CGCC-GATGTTTGGAAGGCTATTCTCAA 75894 | ||||| | ||| | | || || |||| | ||| | || |||| | | Sbjct 4668 AAGAGGGGCGGTACAACAAGCAGATTCCTGCACGCCAGCTGTGGCGCAG--TATTATTGA 4725 Query 75895 ATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAG 75954 | | ||| ||||||||| || |||| ||| | ||||| ||||| || ||| ||| Sbjct 4726 AGCCCAGGTGGAGACTGGTACTCCATTCATGGTCTACAAAGATGCCTGCAACCGCAAGTC 4785 Query 75955 TAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTA 76014 ||||| ||||| |||| || || ||| || || || || || || ||| | |||| Sbjct 4786 CAACCAGCAGAATGTGGGTACCATTAAGTGCAGCAACCTGTGTACTGAGATTGTTCAGTA 4845 Query 76015 CACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT 76074 || | ||||| | ||||| |||||| ||||||| | ||||| | || ||| Sbjct 4846 CAGCTCTGCAGATGAAATTGCTGTGTGCAATCTGGCATCCGTTGCCCTGAACATGTTTGT 4905 Query 76075 ---CAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGT 76131 | ||| | ||| | ||||| ||| || || | | | | || Sbjct 4906 TCGCCCTGATGC------CACCTATGATTTTGAGAAGCTGCGGCGTGTTGTTCATGTAGT 4959 Query 76132 TACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTT---GAGACTGCGCG 76188 || || || ||| | ||||||| || | || || ||| ||| | || | Sbjct 4960 CACACGCAACCTGAACAAAATCATTGAGGTCAACTACTACCCGGTTCCTGAGGCA-CGTG 5018 Query 76189 AAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT 76248 | ||||| ||| |||| | || ||||| | |||||||||||||| || |||| ||| Sbjct 5019 CA--TCTAACATGAGACATCGTCCCATTGGAATTGGTGTTCAAGGTCTGGCAGATGCATT 5076 Query 76249 TATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTT 76308 |||||| ||||| ||||||| || ||||| || | ||| || || || Sbjct 5077 CATTTTGATGCGCTATCCATTTGAGAGTGAGGAAGCACAGCGTCTCAATATTCAGATATT 5136 Query 76309 TGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTC 76368 ||| || ||||| | || | || ||||| || |||||| | ||||| | ||| | Sbjct 5137 TGAGACAATGTACTATGCTGCACTTGAGGCCAGCTGTGAACTTGCTGAGAAGTATGGTCC 5196 Query 76369 CTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG 76427 |||||||| | ||||| ||| || | | || |||||||| ||| |||||| Sbjct 5197 ATATGAGACTTACGAGGGCAGTCCTGCCAGCAAGGGCAGGCTTCAGTATGACTTGTGGG 5255 >seq1046 Length=34766 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/189 (72%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 175235 TTGTGGATTTTCTCAAGCAACCCG-AGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGA 175293 ||||| ||||||| ||||||| || ||| ||| | || ||||||||||| Sbjct 18216 TTGTGAATTTTCTGC-GCAACCCCCAGCAGTATATTGAACTGGGCGCCAAGATCCCAAAG 18158 Query 175294 GGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCG 175353 |||||| | ||| | ||| || || || || ||||| ||| | ||| |||| || Sbjct 18157 GGCGCCATCCTCACAGGTCCTCCTGGCACTGGGAAGACTCTCTTGGCCAAGGCCACTGCT 18098 Query 175354 GGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGT 175412 || ||| |||||||||| |||||| ||||| |||| | | || ||||||||||||| Sbjct 18097 GGAGAAGCAAATGTCCCTTTCATCACAGTG-TCTGGGTCTGAGTTCCTGGAGATGTTTGT 18039 Query 175413 TGGTGTGGG 175421 ||||||||| Sbjct 18038 TGGTGTGGG 18030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596077795478880