Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq16149 107 2e-18 seq8136 98.7 8e-16 >seq16149 Length=31125 Score = 107 bits (118), Expect = 2e-18 Identities = 260/393 (66%), Gaps = 7/393 (2%) Strand=Plus/Plus Query 19430 CCAAA-ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| || || ||||||||| |||| || |||||||||| ||| | || || | || Sbjct 13137 CCAAAGATCGTGAATGGTCCTCAAATATTGGATAAATATGTGGGTGAGTCTGAGGCCAAC 13196 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | || || |||||||||| ||||| || ||| | || ||| | || | || ||| Sbjct 13197 ATCCGGCGCCTGTTTGCTGATGCTGAGGAGGAAGAGAAGCGTCTTGGACCAAACAGTGGC 13256 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA 19608 | ||||| || || | ||||| | || || || || ||| ||||| || | | Sbjct 13257 CTCCACATCATCATTTTTGATGAGATAGATGCCATTTGCAAGGCCAGAGGAAGTGTGGCA 13316 Query 19609 ------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | ||| || ||||||||||| || || || || || |||| | || || || Sbjct 13317 GGCAACACTGGTGTCCATGACACTGTGGTGAACCAGCTTCTTGCAAAGATCGATGGAGTG 13376 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || ||||| || || | || ||||| ||||| || || ||| | || ||| Sbjct 13377 GAGCAGCTGAACAACATCCTTGTCATTGGGATGACCAACCGAAAGGACATGATTGACGAA 13436 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 ||||| | | || ||| | |||||| | |||| ||||| | | || |||| | Sbjct 13437 GCCTTGATCAGGCCTGGTAGATTGGAAGTTCAGATGGAAATCTCCCTGCCAAATGAGGGC 13496 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCA 19815 ||||| ||| | || | ||||| || || ||| Sbjct 13497 GGACGAGTGCAGATCCTCAACATCCACACCTCA 13529 >seq8136 Length=40417 Score = 98.7 bits (108), Expect = 8e-16 Identities = 175/250 (70%), Gaps = 13/250 (5%) Strand=Plus/Minus Query 44040 TGTTTAATGCGATAGAAACAGTACCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098 |||| ||||| || ||||| | ||| ||| |||| | ||||| ||||||||||| || Sbjct 19318 TGTTCAATGCAATCGAAACCATGCCTTGCG-TTAAGCGCAAAGCCGACTGGGCCCTGAAG 19260 Query 44099 TGGATAAATTCAAATGATT------CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTG 44152 |||||| | ||||| | |||| ||||| | |||| ||||| | ||| Sbjct 19259 TGGATAG---CGGATGATCAGTCCACGTTTGCCGAACGTGTAATCGCTTTTGCTGCGGTG 19203 Query 44153 GAAGGCATTTTCTTTTCAGGATCGTTT-GCGGCCATATTTTGGTTAAAGAAACGAGGTTT 44211 |||||||||||||| || || | |||| || ||||| || ||| | ||||| || || | Sbjct 19202 GAAGGCATTTTCTTCTCCGG-TAGTTTCGCCGCCATCTTCTGGCTGAAGAAGCGTGGCGT 19144 Query 44212 GATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGA 44271 |||||||| | || || || ||||| || || || || ||| | || ||||| Sbjct 19143 TATGCCTGGACTTACCTTCAGCAACGAGTTGATCTCGCGCGACGAGGGCCTCCACTGCGA 19084 Query 44272 TTTTGCTTGC 44281 ||||| ||| Sbjct 19083 CTTTGCCTGC 19074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397136533685755