Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq42356 147 3e-30 seq1046 93.3 5e-14 >seq42356 Length=8389 Score = 147 bits (162), Expect = 3e-30 Identities = 541/839 (64%), Gaps = 25/839 (3%) Strand=Plus/Minus Query 110868 CCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG 110927 |||||| |||| |||||||| || | | || ||| ||||| | || ||||| | Sbjct 5255 CCCACAAGTCATACTGAAGCCTGCCCTTGCTGGCAGGACTGCCCTCGTAAGTCTCATATG 5196 Query 110928 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 110987 ||| | ||||| | ||||||||| ||||| || | || | ||||| || |||| Sbjct 5195 GACCATACTTCTCAGCAAGTTCACAGCTGGCCTCAAGTGCAGCATAGTACATTGTCTCAA 5136 Query 110988 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAA 111047 | || || ||| | || ||||| || ||||||| ||||| |||||| | Sbjct 5135 ATATCTGAATATTGAGACGCTGTGCTTCCTCACTCTCAAATGGATAGCGCATCAAAATGA 5076 Query 111048 ATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTC 111107 || |||| || |||||||||||||| | ||||| || | |||| ||| ||||| | Sbjct 5075 ATGCATCTGCCAGACCTTGAACACCAATTCCAATGGGACGATGTCTCATGTTAGATGCAC 5016 Query 111108 GCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAA 111164 | || |||| || || || | || ||||||| | ||| || || || | Sbjct 5015 GTGC---CTCAGGAACCGGGTAGTAGTTGACCTCAATGATTTTGTTCAGGTTGCGTGTGA 4959 Query 111165 CAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG---A 111221 | | | | | || || ||| ||||| | ||| | ||| | | Sbjct 4958 CTACATGAACAACACGCCGCAGCTTCTCAAAATCATAGGTGGCA------TCAGGGCGAA 4905 Query 111222 CATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGT 111281 || || | ||||| | ||||||| |||||| ||||| | ||||| | ||| Sbjct 4904 CAAACATGTTCAGGGCAACGGATGCCAGATTGCACACAGCAATTTCATCTGCAGAGCTGT 4845 Query 111282 ACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTAC 111341 ||| | ||| || ||||| | |||| | |||||| || |||| ||||| ||||| Sbjct 4844 ACTGAACAATCTCAGTACACAGGTTGCTGCACTTAATGGTACCCACATTCTGCTGGTTGG 4785 Query 111342 TCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATT 111401 ||| |||||| ||||| ||||||| |||| | || || || |||||| ||| | || Sbjct 4784 ACTTGCGGTTGCAGGCATCTTTGTAGACCATGAATGGAGTACCAGTCTCCACCTGGGCTT 4725 Query 111402 TGAGAATAGCCTTCCAAACATC-GGCG-GCTGGTACAATG-GC--GTTGGCCCGTCCCTC 111456 | |||| || | ||| | |||| || || ||| || |||| ||| ||||| Sbjct 4724 CAATAATA--CTGCGCCACAGCTGGCGTGCAGG---AATCTGCTTGTTGTACCGCCCCTC 4670 Query 111457 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG 111516 || ||||| ||||||||| ||||||||||| ||| | || || ||||| Sbjct 4669 TTTTTCATACTTCTCGTAGAGGGCCTCAAACTCCTCTCCCCAAACTTCCTCCAGCCCTGG 4610 Query 111517 TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAG 111576 ||| | ||| || | || |||||||| | | |||| ||||| ||||||||| Sbjct 4609 ACACTTCTTTGGGCACATGAGTGACCATTGGGAATCAGCCTCCACCCGACGCATGAAAAG 4550 Query 111577 GTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTT 111636 || || ||||||| | | || ||||| | | || ||||| | ||| ||| Sbjct 4549 ATCAGGGATCCACAAAGCATAGAAAAGATCACGAGCTCGCATTTCTTCCTTCCCTGTGTT 4490 Query 111637 GAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695 || | |||||| | || |||||| ||||| ||||| || |||| ||||| Sbjct 4489 CTTGCGAAGGGAAAGGAAGCTGAAGACATCCGCATGCCAAGGCTCCAGGTAGATTGCGA 4431 >seq1046 Length=34766 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/189 (72%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 11708 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATT 11766 |||||||||||||||||||||| || | | |||| ||||| |||||| |||||||| Sbjct 18030 CCCACACCAACAAACATCTCCAGGAACTCAGACCCAGA-CACTGTGATGAAAGGGACATT 18088 Query 11767 TGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAG 11826 || ||| || || |||| ||| | ||| ||||| || || || || ||| | ||| Sbjct 18089 TGCTTCTCCAGCAGTGGCCTTGGCCAAGAGAGTCTTCCCAGTGCCAGGAGGACCTGTGAG 18148 Query 11827 AAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCT-CGGGTTGCTTGAGAA 11885 | |||||| ||||||||||| || | ||| ||| || ||||||| |||| Sbjct 18149 GATGGCGCCCTTTGGGATCTTGGCGCCCAGTTCAATATACTGCTGGGGGTTGC-GCAGAA 18207 Query 11886 AATCCACAA 11894 ||| ||||| Sbjct 18208 AATTCACAA 18216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627514258269600