Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq42356 118 1e-21 seq8136 111 2e-19 >seq42356 Length=8389 Score = 118 bits (130), Expect = 1e-21 Identities = 305/459 (66%), Gaps = 17/459 (4%) Strand=Plus/Plus Query 20366 CACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATC 20425 || ||||| ||||| || |||||| | || || ||||| || || || || || ||||| Sbjct 5312 CATGGGCTACGCAATTCATTGCTCCTGGCTCCAATGCCCACAGCATCAACGGCTCAGATT 5371 Query 20426 ATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTG 20485 | |||||||| ||| || ||||| | ||||| | || | || | || ||| ||| Sbjct 5372 CTTGGGAACAATGAGTCTATCGAGGCCTACACTTCTAATGTGTATGTCCGCCGTGTTCTG 5431 Query 20486 GCCGGTGAGTTCGTCATG--GTAAACAAGCACCTGGTCCGCGACTTGCAGAAGATCGATA 20543 |||||||||| ||| | || ||| | |||||| | ||| || || | | Sbjct 5432 TCCGGTGAGTT--TCAGGTCGTGAACCACCACCTGCTGAAAGACCTGACTGAGCGAGGTC 5489 Query 20544 TGTGGTCGCCCAAAATTAAGAATGAAATTGTCCGAGCCGGCGGGAGCGTCCAGGCATTGG 20603 ||||| || || | ||||| | || | || | || || |||| || | Sbjct 5490 TGTGGAGCCCTGAAGTCAAGAACCAGATCATT---GCTGATGGTGGC-TCCATTCAACAG 5545 Query 20604 AT-------ATCCCCCAGAACCTCAAGGACATT-TACAGGACCGTATGGGAAATCCCACA 20655 || ||||| | |||| |||| |||| |||| || || |||||||| |||| Sbjct 5546 ATCAAGGGGATCCCAAACGACCTAAAGG-CATTGTACAAAACGGTGTGGGAAATGTCACA 5604 Query 20656 GAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCT 20715 ||||| | || | ||||| || || ||||| || ||||| |||||| |||||| || Sbjct 5605 GAAGACTGTGATGAAGATGGCTGCTGACCGCGGTGCTTACATTGACCAGAGCCAGTCACT 5664 Query 20716 CAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTG 20775 || || ||| | | |||| | | |||| || ||||||||||| |||| || || Sbjct 5665 GAACATCCACATTGCACAGCCGACCTATGGGAAGATGTGCTCCATGCATCTGTATGGGTG 5724 Query 20776 GCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGAC 20814 | | || || || || |||||||| || ||| |||| Sbjct 5725 GAAGGCTGGTCTGAAAACAGGCATGTATTACCTGAGGAC 5763 >seq8136 Length=40417 Score = 111 bits (122), Expect = 2e-19 Identities = 150/205 (73%), Gaps = 13/205 (6%) Strand=Plus/Minus Query 59922 GTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCA-------TT 59974 ||||| | ||||| || |||||| || ||||||| || ||| |||| || Sbjct 19289 GTTAAGCGCAAAGCCGACTGGGCCCTGAAGTGGAT-AGC---GGATGATCAGTCCACGTT 19234 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCG-TGGAAGGAATCTTCTTCTCTGGCTCGTTCT 60033 ||| ||||| | || |||||||| |||| ||||||| || |||||||| || ||| Sbjct 19233 TGCCGAACGTGTAATCGCTTTTGC-TGCGGTGGAAGGCATTTTCTTCTCCGGTAGTTTCG 19175 Query 60034 GTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGC 60093 || || |||||||| || ||||||||| | ||||| || || | ||| ||||||| Sbjct 19174 CCGCCATCTTCTGGCTGAAGAAGCGTGGCGTTATGCCTGGACTTACCTTCAGCAACGAGT 19115 Query 60094 TGATTTCCCGGGACGAGGGCCTCCA 60118 |||| || || |||||||||||||| Sbjct 19114 TGATCTCGCGCGACGAGGGCCTCCA 19090 Score = 95.1 bits (104), Expect = 1e-14 Identities = 185/271 (68%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 ||||| || | |||||| |||| ||||| || | || |||||| |||| |||||| Sbjct 19693 TACCCCGACATTTGGGCCATGTACAAGAAGGCAGAGGCGTCCTTCTGGACCGTGGAGGAG 19634 Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTC 59693 | || ||| || ||||||||||| | ||||| ||||| || ||||||||| || ||| Sbjct 19633 GTGGATCTCTCCAGAGACCTGAAGTACTGGGAGAAGCTGAACGACGACGAGCGCCACTTC 19574 Query 59694 ATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGAC 59753 || ||||| ||||||||||| || ||||| || || | || ||| | | | Sbjct 19573 ATATCCCACGTCCTCGCCTTCTTCGCCGCCTCGGATGGGATCGTCAACGAGAATCTGGTC 19514 Query 59754 ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCA-GTC 59812 || || |||| || || | | |||||||| | || |||| || || ||| Sbjct 19513 GAGAGGTTCGGGCAGGAGGTGCAAGTGACAGAGGCCCGCTGCTTTTACGGGTTCCAGGTC 19454 Query 59813 GTTCAACGAGTCTATCCACTCCGAGACGTAC 59843 | | | ||| ||||||| |||| |||| Sbjct 19453 GCT-ATGGAGAACGTCCACTCGGAGATGTAC 19424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548072603011440