Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq24220 145 8e-30 seq42356 120 3e-22 seq8136 107 2e-18 >seq24220 Length=125647 Score = 145 bits (160), Expect = 8e-30 Identities = 309/455 (68%), Gaps = 10/455 (2%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || || || || || || || || | ||| | ||| || | ||| || | ||| || Sbjct 51005 CCTGTCCCAATGCCGTCCGCTCCGTTGACCAGCACCATGGGAATGACTGGCATGTACCAC 51064 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || ||||| | || | |||||| | | || ||| || | | | |||| |||| Sbjct 51065 TCTGGCTCAATGCGCTGGTTGTCGTCATTCAGGTGCTTCAGGAGGGGCTCGTCATTCGGG 51124 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAG-TGAAAATGTAACGAGAGCTTGCAGC 117330 | |||||||| ||||| ||| |||||| || | |||| ||||| |||| ||| || || Sbjct 51125 TGGAATATGTGCTTGG-CCAGGGTGCTCAGCATGGTGAAGATGTATCGAGGGCTGGCTGC 51183 Query 117331 ATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 ||||| || || || | || || || || ||| | |||| | | || | || Sbjct 51184 GTCCTTCCCTCCCTGCAGCCTGGTGCCAAACTGACCAATGGGCTGGAGCACATTGATATT 51243 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT--ACCTTGGAGGCTCGCCTCA 117448 |||| || || ||||| || |||| ||||| || || || | |||| ||||| Sbjct 51244 GTTGCTCCCGACGAAGTTCTGGGCCAGGTTGATGATGGTGGACAT--GAGGGAGGCCTCC 51301 Query 117449 CCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCT 117508 || ||||| || |||| ||||| |||||| | || |||||||| |||||||| || || Sbjct 51302 CCGTGGTGGTAGGCCGAGTGCTCAGCCACGGACCCTGCCAGCTGGGCCACCTTGATCTCC 51361 Query 117509 GAC--GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGAC 117566 | |||| || ||| ||||||| || | | ||||||||||| ||||| | | Sbjct 51362 CGCTTGTCA--TTACGCTTCAGGCAGGTGTACACGATCTTGCGCTGACCCGGCTTGAAGC 51419 Query 117567 CATCCGCCACGTGAGGGATCGAACGCTTGATGTCC 117601 ||||| ||| |||||| || | || | ||||| Sbjct 51420 CATCCACCAACGAAGGGATGGACCTCTCGTTGTCC 51454 Score = 125 bits (138), Expect = 8e-24 Identities = 300/452 (66%), Gaps = 4/452 (1%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || ||||| || || ||||||||||| | ||| || | | || ||| || Sbjct 51005 CCTGTCCCAATGCCGTCCGCTCCGTTGACCAGCACCATGGGAATGACTGGCATGTACCAC 51064 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || ||||| | | || ||| || ||| || |||| | || | |||| ||| Sbjct 51065 TCTGGCTCAATGCGCTGGTTGTCGTCATTCAGGTGCTTCAGGAGGGGCTCGTCATTCGGG 51124 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | |||||| | | || | |||| |||||||||||||| | |||||| || Sbjct 51125 TGGAATATGTGCTTGGCCAGGGTGCTCAGCATGGTGAAGATGTATCGAGGGCTGGCTGCG 51184 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 ||||| || || ||||| || |||||||| ||| ||||| ||| | |||| ||| Sbjct 51185 TCCTTCCCTCCCTGCAGCCTGGTGCCAAACTGACCAATGGGCTGGAGCACATTGATATTG 51244 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 ||| || ||||| ||||| |||| || | || ||| | || || || ||| Sbjct 51245 TTGCTCCCGACGAAGTTCTGGGCCAGGTTGATGATGGTGGACATGAGGGAGGCCTCCCCG 51304 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCC--G 152233 ||||| || |||| ||||| || | | | || |||| ||| |||||||| || ||| Sbjct 51305 TGGTGGTAGGCCGAGTGCTCAGCCACGGACCCTGCCAGCTGGGCCACCTTGATCTCCCGC 51364 Query 152234 TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGT 152293 | |||| || ||| || |||| ||| | | ||||||||| || || || || | Sbjct 51365 TTGTCA--TTACGCTTCAGGCAGGTGTACACGATCTTGCGCTGACCCGGCTTGAAGCCAT 51422 Query 152294 CCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 |||||| ||| || || | || | ||||| Sbjct 51423 CCACCAACGAAGGGATGGACCTCTCGTTGTCC 51454 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 119075 CTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCC 119134 ||||| | |||| |||||||| || || ||||| ||||| || || || ||||||| Sbjct 53253 CTGAAGATGTTGCAGAGCTTGGCGCCATACCCGTTGCGACCTCCCGTGACCTTCTGCTCC 53312 Query 119135 TCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 ||||||||||||||||| ||||| ||||| || ||||| Sbjct 53313 TCGTCGTTGTAGTTGGACGAGGTCAGCAGGTGGCCGAAGAT 53353 >seq42356 Length=8389 Score = 120 bits (132), Expect = 3e-22 Identities = 306/458 (67%), Gaps = 21/458 (5%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 || |||||||| || ||||| |||| |||||||| || || || ||||||||||| | Sbjct 5315 GGGCTACGCAATTCATTGCTCCTGGCTCCAATGCCCACAGCATCAACGGCTCAGATTCTT 5374 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 || ||||| ||| | ||||| | ||||| | || | || | ||||| || | Sbjct 5375 GGGAACAATGAGTCTATCGAGGCCTACACTTCTAATGTGTATGTCCGCCGTGTTCTGTCC 5434 Query 55598 GGTGAGTTT---GTCATGATCAACAAGCACCTCGTCAAGGACCTG-CAGA---AGATCAA 55650 ||||||||| ||| ||| | || ||||| | || |||||| | || || || Sbjct 5435 GGTGAGTTTCAGGTCGTGAACCAC---CACCTGCTGAAAGACCTGACTGAGCGAGGTCT- 5490 Query 55651 CAAGTGGAACCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAAT 55708 ||||| ||| | |||||| | ||| | ||| || || || ||| | || | Sbjct 5491 ---GTGGAGCCCTGAAGTCAAGAACCAGATCAT-TGCTGAT-GGTGGCTCCATTCAACAG 5545 Query 55709 CT---GGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG 55765 | || ||| || || |||| | ||| ||||||||||| || ||||| Sbjct 5546 ATCAAGGGGATCCCAAACGACCTAAAGGCATTGTACAAAACGGTGTGGGAAATGTCACAG 5605 Query 55766 AAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTG 55825 |||| | |||| | ||| |||||| || ||||| ||||| |||||| |||||| ||| Sbjct 5606 AAGACTGTGATGAAGATGGCTGCTGACCGCGGTGCTTACATTGACCAGAGCCAGTCACTG 5665 Query 55826 AACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGG 55885 |||||| ||| | | || | | ||| || |||| ||||| | || |||||| Sbjct 5666 AACATCCACATTGCACAGCCGACCTATGGGAAGATGTGCTCCATGCATCTGTATGGGTGG 5725 Query 55886 AAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||| || || || || || ||||| || ||| |||| Sbjct 5726 AAGGCTGGTCTGAAAACAGGCATGTATTACCTGAGGAC 5763 >seq8136 Length=40417 Score = 107 bits (118), Expect = 2e-18 Identities = 187/267 (70%), Gaps = 10/267 (4%) Strand=Plus/Plus Query 75071 CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTC 75130 |||| || |||| || | || ||||||| | || || |||| || || | | Sbjct 19457 CTGGAACCCGTAAAAGCAGCGGGCCTCTGTCACTTGCACCTCCTGCCCGAACCTCTCGAC 19516 Query 75131 GATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATA-- 75188 | |||||| ||||||| || |||||||||||||| || || || || | |||| Sbjct 19517 CAGATTCTCGTTGACGATCCCATCCGAGGCGGCGAAGAAGGCGAGGAC--GTGGGATATG 19574 Query 75189 AAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATC 75248 ||||||||||| ||||| | || || ||||| | ||||||||| | | | ||| | | Sbjct 19575 AAGTGGCGCTCGTCGTCGTTCAGCTTCTCCCAGTACTTCAGGTCTCTGGAGAGATCCACC 19634 Query 75249 TCCTCGACCGTCCAGAA--ACTCCCAATC-GCCTTTTTGTACAAAGACCACAAGTCAGGG 75305 ||||| || |||||||| || || || ||||| ||||||| | ||| | ||| ||| Sbjct 19635 TCCTCCACGGTCCAGAAGGACGCC---TCTGCCTTCTTGTACATGGCCCAAATGTCGGGG 19691 Query 75306 TAATTGATTGGAAATGTCGTAAATCGG 75332 || ||||| || || | ||||||| Sbjct 19692 TATTTGATGGGGAAGACCACAAATCGG 19718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546764881969800