Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq7486 129 5e-25 >seq7486 Length=166660 Score = 129 bits (142), Expect = 5e-25 Identities = 237/345 (69%), Gaps = 2/345 (1%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || ||||| | || | |||| | || || || | || ||| ||||||||| || Sbjct 33856 AGTCCAGTGACCTCTGCGACCATGCAGGTAAGAAGGGCATAACTGCTGATGTTAAATGGC 33797 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || ||||| |||| ||| |||| | |||||||||||| || || | ||| || | | Sbjct 33796 ACTCCGAGACCCAAGTCTGCCGATCGCTGGTAGAGCTGGCAGGACAACTCCCCATTGGCG 33737 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 30121 ||||| ||||| || | | ||||| ||||| |||||||| | | || || Sbjct 33736 ACGTAGAACTGGCAGAGGCAATGGCAGGGAGGTAGAGCCATTTTGGGGATATCCACAGGA 33677 Query 30122 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCA-CGGC 30180 |||||||||| || | || || | ||| || || | | | ||| |||| | | | Sbjct 33676 TTCCAGGCGCTCATTACAATTCGGCGGTCATCCGGATCTGACTTAATGCGGTCGATCAGA 33617 Query 30181 GTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGC 30240 || |||||| ||||| ||| | || | |||||| | | ||||||| ||||| || Sbjct 33616 CCCTT-CAGCTGGTCCACACCCTTGCCGGTGTAGTCGGACTTCATGTCGCCATACTCCGC 33558 Query 30241 TCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30285 || || || | ||||||||| || |||||||| || ||||| || Sbjct 33557 CCCAAAGTGACGCCACTGGAAGCCATACACCGGGCCGAGGTCGCC 33513 Score = 104 bits (114), Expect = 2e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 30284 CCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCC 30343 || || ||||||| ||| ||| ||||||||| || | || || | ||| || ||| Sbjct 33460 CCTTCCTCCCTGTCGGTGAACCCCATCTTGTCCAGGAACTGTCGCGAGCTGTTAGCATCC 33401 Query 30344 CAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCAC 30403 ||||| | || ||||||| || |||| ||| || ||| | || | ||||||||| Sbjct 33400 CAGATATGCACTCCCTTCTGCGACAGCTGCGTGGCGTCGGTGCATCCCCGTACGAACCAC 33341 Query 30404 AGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30450 |||||||||||||| || ||||||| | ||||||||||| || || Sbjct 33340 AGCAGCTCCTCCACCACTCCCTTCCAGTACACCCTCTTGGTGGTCAG 33294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405983816715492