Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catajapyx_20aquilonaris_20[genbank_20GCA_5F000934665.1_202015-02-27] 65,951 sequences; 302,133,833 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq29144 107 2e-18 >seq29144 Length=118640 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || || || ||| || || || |||| ||| Sbjct 105619 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGGCCGTCCTCA 105560 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || || | |||||||||||||| || | || ||| |||||| | Sbjct 105559 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGG 105500 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| || | | |||||||| | ||| || |||| ||||| | || Sbjct 105499 ATCTTGGCCTTGACGTTCTCGATGGTATCGCTAGGCTCAACCTCCAGGGTGATGGTCTTG 105440 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||||||| ||||| ||||| ||||| Sbjct 105439 CCAGTCAGCGTCTTAACGAAGATCTGCAT 105411 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| ||||| ||| || || ||||||||||| || || || | || || Sbjct 103938 CACCAGATGGAGCGTCGACTCCTTCTGGATATTATAATCACTCAGCGTGCGGCCATCCTC 103879 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || ||||||||||| || | ||| | || ||| || ||| Sbjct 103878 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTG 103819 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || ||| || | || | | || ||||| | ||| || || | |||||| | || Sbjct 103818 AATCTTCGCCTTCACATTCTCGATGGTGTCGCTAGGCTCAACCTCAAGCGTGATGGTCTT 103759 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| ||||| ||||| || ||||| Sbjct 103758 GCCAGTCAGGGTTTTCACAAAAATCTGCAT 103729 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| |||||| ||| || || || || || ||| || || || | || || Sbjct 105392 CACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCTTC 105333 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| || || || || ||||||||||| | || | | || |||||| Sbjct 105332 AAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTG 105273 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || || | || | | || ||||| | ||| || |||| |||||| | || Sbjct 105272 GATCTTGGCCTTAACATTCTCGATGGTGTCGCTAGGCTCAACCTCCAACGTGATGGTCTT 105213 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || || || || ||||||||||| Sbjct 105212 TCCAGTGAGGGTCTTCACGAAGATTTGCAT 105183 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || || ||| || || || || |||||| || || || | || || Sbjct 104480 CACCAGATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGGCCATCTTC 104421 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || ||||||||||| || | ||| | || ||| || ||| Sbjct 104420 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTG 104361 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| || | | || ||||||| ||| || || | ||||| | || Sbjct 104360 GATCTTGGCCTTGACGTTCTCGATGGTGTCGCTCGGCTCAACCTCAAGAGTGATGGTCTT 104301 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || ||||| ||||| ||||| Sbjct 104300 GCCAGTCAAGGTCTTAACGAAGATCTGCAT 104271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429200340777263