Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Centruroides_20sculpturatus_20[genbank_20GCA_5F000671375.1_202014- 05-05] 10,457 sequences; 926,399,729 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq2640 118 2e-21 seq381 109 8e-19 seq852 107 3e-18 seq1332 93.3 6e-14 seq608 91.5 2e-13 seq1218 84.2 3e-11 >seq2640 Length=94256 Score = 118 bits (130), Expect = 2e-21 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || | | ||||| ||||| || |||||||| ||||| ||||||| Sbjct 12237 TTCCACCTCTGAGACGCAGAACCAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATCTG 12296 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||| || | || || |||| |||||||| |||||||| | ||| ||||| || |||| Sbjct 12297 AAAGCGTGCGGCCGTCTTCTAGCTGTTTTCCCGCAAAAATAAGTCTCTGCTGGTCTGGAG 12356 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACT---TT 146225 |||| ||||| || ||||| || || ||| | Sbjct 12357 GAATACCTTCCTTGTCTTGTATCTTCGCCTTGACGTTCTCGATCGTGTC---ACTCGGCT 12413 Query 146226 CTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 | ||||| ||||| ||||||||||| || |||||||| | ||||||||||||| Sbjct 12414 CGACTTCCAGTGTTATTGTTTTACCAGTCAATGTTTTCACGAATATTTGCATT 12466 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | | ||| | ||| | ||| | || |||||||| || ||||| || | Sbjct 12921 TTCCACCACGCAATCTCAGTACTAGATGGAGTGTGGATTCTTTCTGAATGTTATAGTCCG 12980 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||||| | | ||| ||||||||||||||||||||||| | ||| || ||||| |||| Sbjct 12981 ACAGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAAATAAGTCTCTGTTGATCAGGAG 13040 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||| ||||| Sbjct 13041 GAATTCCTTCTTTGTCTTG 13059 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| |||| |||||||| || | ||| ||||| ||| || || |||||||| || Sbjct 13151 CCACCTCTCAGTCGCAATACCAAGTGCAGAGTCGATTCCTTTTGA-ATGTTATAATCAGA 13209 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || || | | ||| ||||| || ||||| ||||| || | | ||||||||| || || Sbjct 13210 GAGGGTACGACCATCTTCTAACTGCTTTCCGGCAAAGATAAGACGTTGCTGATCAGGGGG 13269 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| || ||||||||||| Sbjct 13270 AATGCCCTCTTTATCTTG 13287 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||||||||| || ||||| | | || || ||||| ||||||||||| |||||||| Sbjct 13652 ATATTATAATCGGACAGAGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCTC 13711 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| || |||||||| || || ||||| Sbjct 13712 TGCTGATCGGGTGGAATTCCCTCCTTGTCTTG 13743 >seq381 Length=560238 Score = 109 bits (120), Expect = 8e-19 Identities = 102/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | |||||| || | ||||||||| ||||| ||| || || |||||||| || Sbjct 529198 CCACCTCTTAATCTTAAAACAAGATGTAAAGTGGATTCCTTTTGA-ATGTTATAATCAGA 529256 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | | ||| ||||||||||||||||||||||| || | ||||||||| ||||| Sbjct 529257 CAATGTACGTCCATCTTCTAATTGTTTTCCAGCAAAAATTAAACGTTGCTGATCAGGAGG 529316 Query 146170 AATTCCT 146176 || ||| Sbjct 529317 GATACCT 529323 >seq852 Length=358492 Score = 107 bits (118), Expect = 3e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | ||||| ||| ||||| ||||| || ||||||||||| | Sbjct 357186 TTCCACCACGAAGACGAAGTACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAG 357245 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||| || | | || || ||||| ||||| |||||||| | || |||||||| || | Sbjct 357246 AAAGGGTGCGACCGTCCTCCAATTGCTTTCCTGCAAAAATAAGCCTCTGCTGATCAGGTG 357305 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||||||||| Sbjct 357306 GAATACCTTCTTTATCTTG 357324 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||| || | ||||||||||| ||||||||||| || | || | | ||| || Sbjct 357433 TACCAAGTGAAGCGTAGATTCTTTTTGAATATTATAATCGGATAAGGTGCGACCATCTTC 357492 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||| ||||| |||||||| ||||| || ||||| || || || |||||||| ||||| Sbjct 357493 TAATTGCTTTCCGGCAAAAATTAATCTCTGTTGATCGGGCGGTATACCTTCTTTGTCTTG 357552 >seq1332 Length=188647 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | ||||||||||| ||||||||||| || | || | | ||| ||| Sbjct 169171 ACCAAGTGAAGTGTAGATTCTTTTTTAATATTATAATCGGATAAGGTGCGACCATCTTCT 169230 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| ||||| |||||||| ||||| || ||||| || || || |||||||| ||||| Sbjct 169231 AATTGCTTTCCGGCAAAAATTAATCTCTGTTGATCGGGCGGTATACCTTCTTTGTCTTG 169289 >seq608 Length=376959 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 24028 ACATAATCACATTTATCAAACCATCTTGCGTGTTGTATCCAAGGATCATCGTCTGTTTCC 24087 ||||| |||| || | ||||||||||||||| | | ||| ||||||||| | ||||| Sbjct 318685 ACATATGCACAGTTTTGAAACCATCTTGCGTGCTCCACCCATGGATCATCGCCCTTTTCC 318744 Query 24088 CATTTATTTAAACCACCATCACAATAAAAGCAT 24120 || ||| ||| ||||||||||||||||||||| Sbjct 318745 CAATTACATAACCCACCATCACAATAAAAGCAT 318777 >seq1218 Length=332501 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | || |||||||| || ||||||||||| || |||| || ||| || Sbjct 114029 ACCAAATGAAGTGTCGATTCTTTCTGAATGTTATAATCTGACAGGGTTCGGCCATCTTCC 113970 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || || |||||||| |||| | || ||||| || || |||||||||||||| || Sbjct 113969 AGCTGCTTGCCAGCAAAGATCAGACGCTGTTGATCTGGTGGGATTCCTTCTTTATCCTG 113911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743429211805440