Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Centruroides_20sculpturatus_20[genbank_20GCA_5F000671375.1_202014- 05-05] 10,457 sequences; 926,399,729 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1218 107 2e-18 seq2640 104 2e-17 seq852 104 2e-17 >seq1218 Length=332501 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | |||||| | || | ||| |||||| || ||||| |||||||| || Sbjct 114275 CCACCACGCAATCTGAGAACGAGGTGAAGCGTGGATTCTTTCTGGATGTTGTAATCCGAT 114216 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| |||||||||||||| || || || || || |||||||||||||| Sbjct 114215 AGGGTGCGCCCGTCTTCCAGTTGTTTTCCCGCAAAGATTAAACGTTGTTGGTCGGGAGGA 114156 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || |||||| |||||| |||||| | | | || | || || Sbjct 114155 ATGCCTTCTTTGTCCTGAATTTTAGCCTTAACATTTTCAATTGTATCACTGGGTTCAACT 114096 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| || ||||| |||||||| || ||||| |||||||| Sbjct 114095 TCTAAAGTAATAGTTTTGCCAGTCAGAGTTTTGACAAATATTTGCAT 114049 >seq2640 Length=94256 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||||||| || |||||||| || ||| ||| ||||| || |||||||| | Sbjct 12467 CCTCCTCTCAATCTCAACACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCCGAC 12526 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| |||| || || || || ||||| ||||||| || |||||| || ||||| Sbjct 12527 AACGTGCGTCCGTCTTCTAGCTGCTTCCCGGCAAATATCAGCCTCTGTTGATCTGGAGGA 12586 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || ||||| |||||| ||| || | | |||| | ||| || Sbjct 12587 ATGCCTTCTTTGTCTTGTATTTTTGCCTTTACGTTTTCTATAGTGTCACTCGGCTCTACT 12646 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| ||||| || || || |||||||| ||||| Sbjct 12647 TCTAGAGTGATGGTCTTCCCCGTGAGTGTTTTTACAAAGATCTGCAT 12693 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | |||||| | ||| | || || ||| || ||||||||||| ||||| | Sbjct 12923 CCACCACGCAATCTCAGTACTAGATGGAGTGTGGATTCTTTCTGAATGTTATAGTCCGAC 12982 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || | ||||||||| || || || | | |||||| || ||||| Sbjct 12983 AGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAAATAAGTCTCTGTTGATCAGGAGGA 13042 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || ||||| |||||| || || | | | | | || | |||||| Sbjct 13043 ATTCCTTCTTTGTCTTGGATTTTTGCTTTTACATTCTCGATGGTATCACTCGGCTCCACT 13102 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || ||||| ||||| || || || ||||| Sbjct 13103 TCCAGGGTGATGGTCTTTCCAGTCAGTGTCTTTACGAAAATCTGCAT 13149 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| || ||||||||||| ||| || |||| | || |||| |||||| |||||||| Sbjct 13414 CTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGACCATCTTCCAATTGTTTACCGGCGAA 13473 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| || || || |||||||| | || ||||||||| |||||| ||| || Sbjct 13474 GATCAGACGTTGCTGATCGGGAGGGATTCCTTCCTTGTCCTGGATTTTTGCCTTGACATT 13533 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| | || || |||| ||| || ||||| || || || ||||| || Sbjct 13534 TTCGATTGTGTCACTCGGTTCGACTTCCAGGGTGATGGTCTTACCGGTGAGGGTCTTGAC 13593 Query 45325 AAAGATTTGCAT 45336 || || ||||| Sbjct 13594 GAAAATCTGCAT 13605 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || | || ||| | ||| | || || |||||||| ||||| || || || ||| | Sbjct 13607 CCTCCACGCAGTCTCAGTACGAGATGAAGTGTGCTCTCTTTCTGGATATTATAATCGGAC 13666 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| |||| ||| ||||| || || ||||| | ||| || ||||| || Sbjct 13667 AGAGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCTCTGCTGATCGGGTGGA 13726 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||| |||||| ||| || | | | | || | ||||| Sbjct 13727 ATTCCCTCCTTGTCTTGGATTTTTGCCTTCACGTTCTCGATCGTATCACTTGGTTCCACT 13786 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || |||| || ||||| || || ||||| Sbjct 13787 TCCAAAGTGATAGTCTTACCAGTCAACGTTTTCACGAATATCTGCAT 13833 >seq852 Length=358492 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| | | ||||| || || || || ||||||||||| || || | Sbjct 357872 CCTCCTCTCAAACGAAGAACCAAATGAAGGGTAGATTCTTTCTGAATGTTATAATCAGAC 357931 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | |||| |||| || ||||| ||||||||||| ||||||| |||||||||||| || Sbjct 357932 AAAGTGCGACCGTCTTCGAGTTGCTTTCCGGCGAAAATCAACCTCTGTTGGTCGGGCGGA 357991 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || ||||| ||| ||| || || | | | |||| | ||| ||| Sbjct 357992 ATGCCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCGATTGTGTCGCTTGGCTCTACC 358051 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||| ||||| ||||| || || ||||| || || || || ||||| || Sbjct 358052 TCCAAAGTAATAGTCTTCCCAGTTAGAGTTTTAACGAAAATCTGCATTTT 358101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395024849764597