Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Centruroides_20sculpturatus_20[genbank_20GCA_5F000671375.1_202014- 05-05] 10,457 sequences; 926,399,729 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2640 140 3e-28 seq1218 123 2e-23 seq852 120 3e-22 >seq2640 Length=94256 Score = 140 bits (154), Expect = 3e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||||||||| ||||| ||||| || ||||| |||||| |||||| Sbjct 12719 TGAAGGGTCGACTCTTTTTGGATGTTGTAATCTGACAGTGTGCGACCGTCTTCTAGCTGT 12778 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| || ||||||||||||| |||||||| ||||| ||||||||||| ||| | || Sbjct 12779 TTACCCGCGAAGATCAGACGTTGTTGATCGGGTGGTATACCTTCTTTGTC-CTGAATCTT 12837 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | |||| | ||| | ||||| |||||||||| || | || | ||||| ||||| Sbjct 12838 AGCCTTTACATTTTCGATAGTGTCACTGGGCTCCACTTCTAAAGTGATGGTCTTTCCGGT 12897 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 12898 AAGTGTTTTCACGAAGATCTGCAT 12921 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||||||||||||||| |||||| | |||| ||||| | ||| Sbjct 13403 TGAAGGGTCGACTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGACCATCTTCCAATTGT 13462 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| || ||||||||||||||||||||||||| || ||||| ||||| ||||||| Sbjct 13463 TTACCGGCGAAGATCAGACGTTGCTGATCGGGAGGGATTCCTTCCTTGTCCTGGATTTTT 13522 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | ||| | |||||| | || || || || | ||| | ||||| ||||| Sbjct 13523 GCCTTGACATTTTCGATTGTGTCACTCGGTTCGACTTCCAGGGTGATGGTCTTACCGGTG 13582 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || || ||||| || ||||| Sbjct 13583 AGGGTCTTGACGAAAATCTGCAT 13605 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||| || ||||||| || |||||||| || || || || || | Sbjct 12467 CCTCCTCTCAATCTCAACACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCCGAC 12526 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| ||||| || || ||| | ||||| | || ||||| ||||| Sbjct 12527 AACGTGCGTCCGTCTTCTAGCTGCTTCCCGGCAAATATCAGCCTCTGTTGATCTGGAGGA 12586 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| |||||| |||| | ||| | ||||| | ||||| || Sbjct 12587 ATGCCTTCTTTGTCTTGTATTTTTGCCTTTACGTTTTCTATAGTGTCACTCGGCTCTACT 12646 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || | |||||||| || || |||||| Sbjct 12647 TCTAGAGTGATGGTCTTCCCCGTGAGTGTTTTTACAAAGATCTGCATA 12694 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 |||||| || || ||||||||| || |||| | |||||| | || || |||||| | Sbjct 13642 CTCTTTCTGGATATTATAATCGGACAGAGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAA 13701 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 ||||| | ||||||||||| || || || || ||||| ||||||| || | | Sbjct 13702 GATCAATCTCTGCTGATCGGGTGGAATTCCCTCCTTGTCTTGGATTTTTGCCTTCACGTT 13761 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | || || | || ||||| || | || | ||||| || ||||||||||| || Sbjct 13762 CTCGATCGTATCACTTGGTTCCACTTCCAAAGTGATAGTCTTACCAGTCAACGTTTTCAC 13821 Query 139753 GAATATTTGCAT 139764 |||||| ||||| Sbjct 13822 GAATATCTGCAT 13833 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || ||||| ||||||||||| || || || | ||||| | ||||| ||| Sbjct 12953 GTGGATTCTTTCTGAATGTTATAGTCCGACAGAGTACGACCATCTTCTAATTGTTTTCCA 13012 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | || || | || ||||| ||||| || ||||||||||| ||||||| |||| Sbjct 13013 GCAAAAATAAGTCTCTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTTGCTTTT 13072 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || | |||||||| || | ||| | ||||| || |||| || Sbjct 13073 ACATTCTCGATGGTATCACTCGGCTCCACTTCCAGGGTGATGGTCTTTCCAGTCAGTGTC 13132 Query 139748 TTTACGAATATTTGCATA 139765 |||||||| || |||||| Sbjct 13133 TTTACGAAAATCTGCATA 13150 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| ||| ||||| | || || ||||||||||| || ||||| Sbjct 12239 CCACCTCTGAGACGCAGAACCAAGTGTAAGGTGGATTCTTTTTGAATATTGTAATCTGAA 12298 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| |||||||| || ||| | || || | ||||| || ||||| Sbjct 12299 AGCGTGCGGCCGTCTTCTAGCTGTTTTCCCGCAAAAATAAGTCTCTGCTGGTCTGGAGGA 12358 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| || || || | | || | ||||| | ||||| || Sbjct 12359 ATACCTTCCTTGTCTTGTATCTTCGCCTTGACGTTCTCGATCGTGTCACTCGGCTCGACT 12418 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || ||||| ||||| |||||||||||||| Sbjct 12419 TCCAGTGTTATTGTTTTACCAGTCAATGTTTTCACGAATATTTGCAT 12465 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || ||||| | || || || ||||||||||||||||| | || | Sbjct 13163 CGCAATACCAAGTGCAGAGTCGATTCCTTTTGAATGTTATAATCAGAGAGGGTACGACCA 13222 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||| || || ||| |||| |||||||||||||| || || ||||| ||||| Sbjct 13223 TCTTCTAACTGCTTTCCGGCAAAGATAAGACGTTGCTGATCAGGGGGAATGCCCTCTTTA 13282 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| || | | ||| | ||||| | ||||| || || | || | Sbjct 13283 TCTTGTATTTTTGCCTTGACGTTTTCTATAGTGTCACTCGGCTCTACTTCCAGAGTGATG 13342 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||||| | ||||| || || || ||||| Sbjct 13343 GTCTTTCCGGTGAGAGTTTTAACAAAGATCTGCAT 13377 >seq1218 Length=332501 Score = 123 bits (136), Expect = 2e-23 Identities = 156/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 |||||| || | || |||||||| ||||| || || ||| | || | |||||| Sbjct 114486 AACTAAATGCAGGGTCGACTCTTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCTTC 114427 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||| || || ||| ||||||| | || || ||||| || |||||||||||||| | Sbjct 114426 CAACTGCTTCCCTGCAAAGATCAGTCTCTGTTGGTCGGGCGGAATGCCTTCTTTGTCC-T 114368 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||| | ||||| | ||| | ||||||| ||||||| || || | || | |||| Sbjct 114367 GAATTTTAGCTTTTACATTTTCTATTGTGTCGCTGGGCTCTACTTCCAGTGTTATAGTCT 114308 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | ||||| | |||||| || |||||||||||| Sbjct 114307 TTCCGGTGAGCGTTTTGACAAATATTTGCATA 114276 Score = 122 bits (134), Expect = 9e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| ||| || ||||| || ||||| ||||| | |||| | |||||| Sbjct 114258 AACGAGGTGAAGCGTGGATTCTTTCTGGATGTTGTAATCCGATAGGGTGCGCCCGTCTTC 114199 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 || ||||| || ||| |||| | |||||| || |||||||| |||||||||||||| | Sbjct 114198 CAGTTGTTTTCCCGCAAAGATTAAACGTTGTTGGTCGGGAGGAATGCCTTCTTTGTCC-T 114140 Query 139675 GATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||| | ||| | | ||| | ||| || |||| || || || | || | || | Sbjct 114139 GAATTTTAGCCTTAACATTTTCAATTGTATCACTGGGTTCAACTTCTAAAGTAATAGTTT 114080 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| |||| ||||| || ||||||||||| Sbjct 114079 TGCCAGTCAGAGTTTTGACAAATATTTGCAT 114049 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| || |||| || || ||||| |||||||||||||| || || | ||||| Sbjct 114030 AACCAAATGAAGTGTCGATTCTTTCTGAATGTTATAATCTGACAGGGTTCGGCCATCTTC 113971 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || |||||| |||||||||| || ||||| || || || |||||||| || | Sbjct 113970 CAGCTGCTTGCCAGCAAAGATCAGACGCTGTTGATCTGGTGGGATTCCTTCTTTATC-CT 113912 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | ||||| | || | || || | ||||| || || | ||| | |||| Sbjct 113911 GAATCTTGGCTTTTACATTCTCTATAGTATCACTTGGCTCAACTTCCAAGGTAATGGTCT 113852 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||||| ||||| || ||||| ||||| Sbjct 113851 TGCCAGTCAAGGTTTTAACAAATATCTGCAT 113821 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || |||||||| || || || || | || |||||||| || || Sbjct 113440 GTAGACTCCTTCTGAATGTTGTAGTCAGACAGGGTACGACCATCCTCGAGCTGCTTGCCT 113381 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| ||||||||||| || || ||||| || || ||| || ||| Sbjct 113380 GCAAAGATGAGACGCTGCTGATCGGGCGGAATACCTTCCTTATCCTGGATCTTAGTTTTC 113321 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||| || | ||||||||||||| || | || || || || || || Sbjct 113320 ACATTTTCAATTGTATCACTAGGCTCCACCTCAAGAGTAATTGTTTTCCCAGTTAATGTC 113261 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 113260 TTAACGAAGATCTGCAT 113244 >seq852 Length=358492 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||| | ||| || |||| ||||| ||||| |||||||||||||| | Sbjct 357872 CCTCCTCTCAAACGAAGAACCAAATGAAGGGTAGATTCTTTCTGAATGTTATAATCAGAC 357931 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||||||| || || || || | |||| | || || ||||| || Sbjct 357932 AAAGTGCGACCGTCTTCGAGTTGCTTTCCGGCGAAAATCAACCTCTGTTGGTCGGGCGGA 357991 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| | |||| ||||| | || | ||||||| | ||||| || Sbjct 357992 ATGCCTTCTTTGTC-TTGAATCTTTGCTTTTACATTCTCGATTGTGTCGCTTGGCTCTAC 358050 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || || | ||||| ||||| || ||||| Sbjct 358051 CTCCAAAGTAATAGTCTTCCCAGTTAGAGTTTTAACGAAAATCTGCAT 358098 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| ||||| | || ||||||| |||||| ||||||||||| ||||||||| Sbjct 357416 CCACCTCGCAAACGAAGTACCAAGTGAAGCGTAGATTCTTTTTGAATATTATAATCGGAT 357475 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | || || || ||| | || | | || |||||||| ||| Sbjct 357476 AAGGTGCGACCATCTTCTAATTGCTTTCCGGCAAAAATTAATCTCTGTTGATCGGGCGGT 357535 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | |||| || | | ||| | || || |||| || || Sbjct 357536 ATACCTTCTTTGTC-TTGAATCTTTGCCTTGACGTTTTCTATGGTATCACTGGGTTCAAC 357594 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || || | ||||| || ||||||||||| Sbjct 357595 TTCCAACGTAATGGTTTTTCCAGTAAGAGTTTTCACAAATATTTGCAT 357642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495999158234400