Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Centruroides_20sculpturatus_20[genbank_20GCA_5F000671375.1_202014- 05-05] 10,457 sequences; 926,399,729 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1427 125 7e-24 seq725 114 1e-20 >seq1427 Length=229792 Score = 125 bits (138), Expect = 7e-24 Identities = 308/458 (67%), Gaps = 17/458 (4%) Strand=Plus/Plus Query 120786 TTATGTACCTGGAAAAAGAGGTTGGTTAAAGATGAAGAAGGATTACTTAAATGATGGATC 120845 |||| |||||||||| || |||| | || | || || ||||| | |||| || Sbjct 217874 TTATAAACCTGGAAAACGACATTGGCTGAAAGTCAAAAAAGATTATCTTCATGAGGGTAG 217933 Query 120846 CATGGCAGATTCTGCAGACTTAGTAGTTTTAGGATCATATTACGGTAAAGGCTCTAAGGG 120905 |||||| || |||||| ||||| |||||||| |||||| |||| || ||| || Sbjct 217934 CATGGCTGACAGTGCAGATTTAGTTGTTTTAGGTGCATATTTTGGTACTGGTAGTAAAGG 217993 Query 120906 TGGCACACCATCGATATTTTTAATGGGGTGCTATGATAATGAAAGTAATAATTGGAAAAC 120965 ||| | || || ||||||||||| |||| ||||| | | || ||| || Sbjct 217994 TGGAATGATGTCAATTTTTTTAATGGGTTGCTTCGATAAGACATCCCAAAAGTGGTGTAC 218053 Query 120966 AGTAACTAAA-TGCTCCGGCCACG-AC-GATGACACATTaaaaaaagtacaaaaagaaat 121022 ||| |||||| | | | || || |||| ||| ||||| |||||| |||| | Sbjct 218054 AGTTACTAAAGTACATGGAGGACATACTGATGCAGTTTTAGAAAAATTACAAACAGAATT 218113 Query 121023 agagtttttaaaaattagtaaagatacaaaaaaaatcccaaaaTGGTTAATAGTAGATAA 121082 ||| | | ||| ||| || || ||| | | |||| | ||||||| || | || Sbjct 218114 AGACATGGTGAAAGTTAACAATGACACAGATA---TCCCTCATTGGTTAAACGTTAA-AA 218169 Query 121083 AATATATTAT-CCAGATTTTGTAGTTTGT---GATCCaaaaaaaTCACAGGTGTGGGAAA 121138 ||| | | || ||||||||| |||||| |||||||||| ||||||||| ||||| | Sbjct 218170 AATCTTTAATTCCAGATTTT---GTTTGTAAAGATCCAAAAACATCACAGGTATGGGAGA 218226 Query 121139 TATCGGGATCTAGTTTTACAAAATCGATACATCACACAGCAGATGGGATTTCGATAAGAT 121198 | | ||| | ||| | ||| | | ||| |||||| || || || ||||| | Sbjct 218227 TTGCAGGAGCAGAATTTTCTAAAGCTGAAGCTCATACAGCA---GGAATATCAATAAGGT 218283 Query 121199 TTCCTAGATTTaaaaaaaTTAGATATGATAAAAATTGG 121236 ||||| | ||| |||| | |||||||||| |||| Sbjct 218284 TTCCTCGTGTTACTTTAATTCGTTATGATAAAACTTGG 218321 >seq725 Length=361488 Score = 114 bits (126), Expect = 1e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13743 |||||||| || || | ||| || ||||||||||| ||||| | || | |||||| Sbjct 94746 TCATCTCTGCTGATTAATTCATTACTGAATGTTAATCCAGGCATAAGACCCCTCTTTTTT 94805 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 13803 |||||||| ||||| || || ||||| |||||||| ||||| || ||||| ||||| || Sbjct 94806 AACCAAAAAATTGCTGCAAACGATCCAGAAAAGAAGATTCCTTCGACTGCCGCAAATGCA 94865 Query 13804 ATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAt 13863 | | ||||||||||| | | | | |||||| ||| | ||||| |||| | Sbjct 94866 ACAACACGTTCTCCAAATGTGGAAGTCAGATCATTTATCCAATTTATTGCCCAGTCAGCT 94925 Query 13864 ttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 ||| |||| | | | ||| || |||||||| ||||| Sbjct 94926 TTTCTTTTGACGCAGGGTAATGTCTCTATTGCATTAAATAA 94966 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 14045 CCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14104 |||| |||||||| || || ||||||||||| ||||| || || |||| | ||||| Sbjct 98372 CCAAATTTTCATTTACTATGCCATCACTAGCAGCAAAGAAAGCTAATACATGAGAAATAA 98431 Query 14105 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14164 | | | || |||| || | || ||||| | | |||||| ||||| || |||| Sbjct 98432 AATGCTTTTCATCATCATTCAAGAGTTCCCAATGAGAAAGATCCTTTGAAAGGTCAACTT 98491 Query 14165 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14224 | ||||| ||||| || ||| ||||||| || ||||| ||| || || |||| Sbjct 98492 CTTCAACCGTCCAGAATGAAGCTTCAGCTTTCTTGTACATCTGCCAGATATCAGGATATT 98551 Query 14225 ATATAGGAAAAACTACAAA 14243 || ||||||| ||||| Sbjct 98552 CAATGGGAAAAATGACAAA 98570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478526242461480