Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Centruroides_20sculpturatus_20[genbank_20GCA_5F000671375.1_202014- 05-05] 10,457 sequences; 926,399,729 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1218 107 1e-18 seq2640 105 5e-18 seq852 104 2e-17 >seq1218 Length=332501 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || |||||| ||||||||||| || || ||| | ||| |||| ||| Sbjct 114485 ACTAAATGCAGGGTCGACTCTTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCTTCC 114426 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || ||||| ||||||| |||||| || | |||| ||| || ||||| | Sbjct 114425 AACTGCTTCCCTGCAAAGATCAGTCTCTGTTGGTCGGGCGGAATGCCTTCTTTGTCCTGA 114366 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||||||| | | | || | ||| || |||| || || || ||| Sbjct 114365 ATTTTAGCTTTTACATTTTCTATTGTGTCGCTGGGCTCTACTTCCAGTGTTATAGTCTTT 114306 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||| ||||| || ||||| Sbjct 114305 CCGGTGAGCGTTTTGACAAATATTTGCAT 114277 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||||| ||||| || ||||| || || |||| | || ||| Sbjct 114029 ACCAAATGAAGTGTCGATTCTTTCTGAATGTTATAATCTGACAGGGTTCGGCCATCTTCC 113970 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| ||||| ||||||||||| | || | || || || || | Sbjct 113969 AGCTGCTTGCCAGCAAAGATCAGACGCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGA 113910 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||||||| | | || || | ||| || |||| ||||| || || Sbjct 113909 ATCTTGGCTTTTACATTCTCTATAGTATCACTTGGCTCAACTTCCAAGGTAATGGTCTTG 113850 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| ||||| |||||||| Sbjct 113849 CCAGTCAAGGTTTTAACAAATATCTGCAT 113821 >seq2640 Length=94256 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||||||||| || || ||| |||||| || |||||||| || || | | || |||| Sbjct 12481 CAACACCAAGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCCGACAACGTGCGTCCGTC 12540 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | |||||| |||||||||||||| | ||||||||| | |||| ||| || ||||| Sbjct 12541 TTCTAGCTGCTTCCCGGCAAATATCAGCCTCTGTTGATCTGGAGGAATGCCTTCTTTGTC 12600 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 || ||| ||||| | | || || || ||| || || | || || || Sbjct 12601 TTGTATTTTTGCCTTTACGTTTTCTATAGTGTCACTCGGCTCTACTTCTAGAGTGATGGT 12660 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| | ||||||||||| |||||||| Sbjct 12661 CTTCCCCGTGAGTGTTTTTACAAAGATCTGCAT 12693 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||||||||||| || ||||| ||||| || ||| | || |||| ||||| || Sbjct 13630 ATGAAGTGTGCTCTCTTTCTGGATATTATAATCGGACAGAGTGCGCCCGTCTTCCAATTG 13689 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| |||| || ||| ||||| | |||| ||||||||||| || || Sbjct 13690 CTTTCCAGCAAAGATCAATCTCTGCTGATCGGGTGGAATTCCCTCCTTGTCTTGGATTTT 13749 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || || | | | || | ||||| |||| || || || || || || Sbjct 13750 TGCCTTCACGTTCTCGATCGTATCACTTGGTTCCACTTCCAAAGTGATAGTCTTACCAGT 13809 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 ||| ||||| || || |||||||| Sbjct 13810 CAACGTTTTCACGAATATCTGCAT 13833 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||||| ||||| || || || || ||| | ||| | || || || || Sbjct 12946 ATGGAGTGTGGATTCTTTCTGAATGTTATAGTCCGACAGAGTACGACCATCTTCTAATTG 13005 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 || || ||||| || |||| ||||||||| | |||| || || ||||| || || Sbjct 13006 TTTTCCAGCAAAAATAAGTCTCTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTT 13065 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | ||||||| | | | || || |||||| |||| || || || ||||| || Sbjct 13066 TGCTTTTACATTCTCGATGGTATCACTCGGCTCCACTTCCAGGGTGATGGTCTTTCCAGT 13125 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||||||||| Sbjct 13126 CAGTGTCTTTACGAAAATCTGCAT 13149 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| | ||||| ||| || || |||||||||||| |||||||| || || | ||| Sbjct 13388 AGCCTGAGCACCAGATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGGAAAGGGTGCGA 13447 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || |||||||| || ||||| || || ||||| | || | || ||| Sbjct 13448 CCATCTTCCAATTGTTTACCGGCGAAGATCAGACGTTGCTGATCGGGAGGGATTCCTTCC 13507 Query 48669 TTGTC 48673 ||||| Sbjct 13508 TTGTC 13512 >seq852 Length=358492 Score = 104 bits (114), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||||| ||||| || |||||||| | | | ||| |||| || Sbjct 357890 ACCAAATGAAGGGTAGATTCTTTCTGAATGTTATAATCAGACAAAGTGCGACCGTCTTCG 357949 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| ||||| || |||| | |||||| || | |||| ||| || ||||| | Sbjct 357950 AGTTGCTTTCCGGCGAAAATCAACCTCTGTTGGTCGGGCGGAATGCCTTCTTTGTCTTGA 358009 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----CTCCACCTCCACCGTAATCGT 48733 |||||| ||||||| | || | || ||| ||| ||||||| ||||| || Sbjct 358010 ATCTTTGCTTTTACATTCTC----GATTGTGTCGCTTGGCTCTACCTCCAAAGTAATAGT 358065 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || | |||||| || ||||||||||| Sbjct 358066 CTTCCCAGTTAGAGTTTTAACGAAAATCTGCAT 358098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380889051526611