Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Centruroides_20sculpturatus_20[genbank_20GCA_5F000671375.1_202014- 05-05] 10,457 sequences; 926,399,729 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq852 116 3e-21 seq1218 113 3e-20 seq381 87.8 1e-12 seq1332 84.2 2e-11 >seq852 Length=358492 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||||||||||||||| ||| ||||| | || || ||| || Sbjct 357642 ATGCAAATATTTGTGAAAACTCTTACTGGAAAAACCATTACGTTGGAAGTTGAACCCAGT 357583 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || || || ||||| ||| || |||||||||||| | ||| || || Sbjct 357582 GATACCATAGAAAACGTCAAGGCAAAGATTCAAGACAAAGAAGGTATACCGCCCGATCAA 357523 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || | ||||||||||||||||| ||||| || || | |||| ||| |||||||| || Sbjct 357522 CAGAGATTAATTTTTGCCGGAAAGCAATTAGAAGATGGTCGCACCTTATCCGATTATAAT 357463 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||| || | || ||||| | |||||||| || || Sbjct 357462 ATTCAAAAAGAATCTACGCTTCACTTGGTACTTCGTTTGCGAGGTGG 357416 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGA---A 27843 |||||||| ||||| || |||||||| |||||||| |||||| | || || || | Sbjct 358101 AAAATGCAGATTTTCGTTAAAACTCTAACTGGGAAGACTATTACTTTGGAGGTAGAGCCA 358042 Query 27844 AGCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||| | || || | ||| || ||| ||| || ||||||||||| ||||| Sbjct 358041 AGCGAC-ACAATCGAGAAT--GTAAAAGCAAAGATTCAAGACAAAGAAGGCATTCCGCCC 357985 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || || |||| ||||| |||||||| ||| | || |||| |||| ||||| ||| Sbjct 357984 GACCAACAGAGGTTGATTTTCGCCGGAAAGCAACTCGAAGACGGTCGCACTTTGTCTGAT 357925 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| || ||||| || | ||||||||| | |||||| | || || Sbjct 357924 TATAACATTCAGAAAGAATCTACCCTTCATTTGGTTCTTCGTTTGAGAGGAGG 357872 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||| ||||| || | ||||| ||| ||||| | || || ||| | Sbjct 357871 AATGCAGATTTTCGTGAAGACATTAACTGGAAAAACCATTACTTTGGAGGTAGAACCAAG 357812 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || || || ||||| || || ||||| | ||| || || Sbjct 357811 CGATACTATCGAAAACGTAAAGGCCAAAATCCAGGATAAGGAAGGAATCCCGCCTGACCA 357752 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| || || ||||||||||| ||||| || || |||| |||| ||||| |||||||| Sbjct 357751 GCAGCGCTTGATTTTTGCCGGTAAACAGTTAGAGGACGGTCGCACTTTGTCAGATTACAA 357692 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| || || || | |||||||| | | |||||||| || Sbjct 357691 CATCCAGAAGGAATCTACGCTCCATTTGGTGCTTAGATTGCGTGGTGG 357644 >seq1218 Length=332501 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||||| ||||| ||| |||||| | || || ||| || Sbjct 114048 AATGCAAATATTTGTCAAAACTCTGACTGGCAAAACTATTACTTTAGAAGTTGAACCCAG 114107 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || || ||||| ||||||||||| |||| || Sbjct 114108 TGATACAATTGAAAAT--GTTAAGGCTAAAATTCAGGACAAAGAAGGCATTCCTCCCGAC 114165 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| ||||| ||||| ||||||||| |||| |||| |||| | | || |||||| Sbjct 114166 CAACAACGTTTAATCTTTGCGGGAAAACAACTGGAAGACGGGCGCACCCTATCGGATTAC 114225 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||||| ||| | || | ||| | | |||||||| || Sbjct 114226 AACATCCAGAAAGAATCCACGCTTCACCTCGTTCTCAGATTGCGTGGTGG 114275 >seq381 Length=560238 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| ||||||||||| ||||||||||| || || | ||| | ||||| ||| Sbjct 529310 GATCAGCAACGTTTAATTTTTGCTGGAAAACAATTAGAAGATGGACGTACATTGTCTGAT 529251 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 || ||||| ||||| || |||||| ||| | ||||| Sbjct 529250 TATAACATTCAAAAGGAATCCACTTTACATCTTGTTTT 529213 >seq1332 Length=188647 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| | ||| || || || | ||||||||||||||||| ||||| || Sbjct 169286 GACAAAGAAGGTATACCGCCCGATCAACAGAGATTAATTTTTGCCGGAAAGCAATTAGAA 169227 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||| |||||||| || || ||||||| || | || |||||| | Sbjct 169226 GATGGTCGCACCTTATCCGATTATAATATTAAAAAAGAATCTACACTTCACTTGGTTCTT 169167 Query 28003 CGTTTGCGTGGCGG 28016 |||||| | || || Sbjct 169166 CGTTTGAGAGGAGG 169153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355817047227639