Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq211 98.7 1e-15 >seq211 Length=255845 Score = 98.7 bits (108), Expect = 1e-15 Identities = 277/421 (66%), Gaps = 6/421 (1%) Strand=Plus/Minus Query 16983 ATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTT 17042 || |||| |||||| || | |||||| ||||| | || ||||| | || |||| Sbjct 252227 ATACCTCATCTCTGGAAATTAATTCGTTGCTGAATGTAAGTCCAGGCATGATACCACGTT 252168 Query 17043 TCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAA 17102 |||| | |||||| || || ||||| ||| ||||| || || || || | ||| | Sbjct 252167 TCTTCAGCCAAAAGATAGCAGCGAAACTACCACTGAAGAAGATTCCTTCTACCGCTGCGA 252108 Query 17103 ACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAA-TCCATTTCTGCACCCAC 17161 |||| || | ||||| || | || || | | | | |||| |||| || |||| Sbjct 252107 ACGCAATCACACGTTCTGCAAAAGTTGC-TGTGTCATGCGAAATCCAATTTAAGGCCCAA 252049 Query 17162 TCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA--ATTTCTCTTTTT 17219 | |||||||| | ||| | | || ||||| || || | | || || | | Sbjct 252048 TTGGCTTTTTTAGCAACGCAGGGAAGATTCTCGATGGCATTGAAGAGAAAATCCCTCTCT 251989 Query 17220 CCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCT 17279 | | | | | || | || | || || ||| |||||||| ||||||| || | Sbjct 251988 TCGGCATTAC--TGATGAATGTGTTTATAAGGAGGGAATACATTTCTGAGTGTACATTTT 251931 Query 17280 CCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGA 17339 | || ||||| ||||| || || ||||| || ||||||| || ||| ||||| || Sbjct 251930 CAATTGCTATTTGAAAACCATAGAAGCACCGTGCTTCCGTTACTTGGACTTCTTGACTGA 251871 Query 17340 ATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATAT 17399 | ||||| ||||||| || || || || || || || || ||||||||||||| || Sbjct 251870 ACCGTTCTACTAGATTCTCATTGACAATACCATCTGATGCTGCAAAAAACGCCAATACAT 251811 Query 17400 G 17400 | Sbjct 251810 G 251810 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 16795 TCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACG 16854 |||||| || || |||| || || || ||||| | ||| |||||||| || | | Sbjct 252488 TCTATCGGCGACGTATTCGATGTACTGACACATGAGAGTGCAATTCATTCCAATCATTTG 252429 Query 16855 TACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACT 16914 || ||||| ||| |||| | ||| || || || | || || ||||| ||||| Sbjct 252428 GACTGGAAGTGCTACCGTGAGGAATTCTTTTTCAATTTCCACAGCATCCTTGATAATGGA 252369 Query 16915 AGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATC 16974 ||||||||||| || ||| | ||| ||| ||||| ||||| ||||| ||||| || Sbjct 252368 GATAACTCGTTCCTGAGAAGGTTTCTGTATAATGTGTTTGAACATTAGACAAGCGAATTC 252309 Query 16975 GCAATGTAATCCCT 16988 ||| || | ||||| Sbjct 252308 GCAGTGAAGTCCCT 252295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517532816623680