Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq211 168 8e-37 seq1554 156 5e-33 seq295 100 3e-16 seq648 89.7 6e-13 >seq211 Length=255845 Score = 168 bits (186), Expect = 8e-37 Identities = 304/444 (68%), Gaps = 3/444 (1%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||||||||||| || || ||||| ||||| | ||||| || | Sbjct 252224 CCTCATCTCTGGAAATTAATTCGTTGCTGAATGTAAGTCCAGGCATGATACCACGTTTCT 252165 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||||| || | || || ||| ||||| ||||||||||| || || || | Sbjct 252164 TCAGCCAAAAGATAGCAGCGAAACTACCACTGAAGAAGATTCCTTCTACCGCTGCGAACG 252105 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 24333 |||| | | |||| || || || ||||||| ||||| ||| ||||||| || Sbjct 252104 CAATCACACGTTCTGCAAAAGTTGCTGTGTCATGCGAAATCCAATTTAAGGCCCAATTGG 252045 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTAC 24393 | || || || || || | |||| || ||||| |||||| | | | || | Sbjct 252044 CTTTTTTAGCAACGCAGGGAAGATTCTCGATGGCATTGAAGAGAAAATCCCTCTCTTCGG 251985 Query 24394 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 24453 || | | |||| | || | || ||||||||| || || | |||||||| | Sbjct 251984 CATTACTGATGAATGTGTTTATAAGGAGGGAATACATTTCTGAGTGTACATTTTCAATTG 251925 Query 24454 CCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTT 24513 | |||||||| || ||||| || | || || || | || |||||| || || |||| Sbjct 251924 CTATTTGAAAACCATAGAAGCACCGTGCTTCCGTTACTTGGACTTCTTGACTGAACCGTT 251865 Query 24514 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 24573 || ||| ||| ||||| || || || || ||||||||||||||||||||||| || Sbjct 251864 CTACTAGATTCTCATTGACAATACCATCTGATGCTGCAAAAAACGCCAATACATGGGATA 251805 Query 24574 TAAAATATTTTTCGTCTGGTGTTA 24597 |||||| |||||| ||||| Sbjct 251804 TAAAATGACGTTCGTCATCTGTTA 251781 >seq1554 Length=169980 Score = 156 bits (172), Expect = 5e-33 Identities = 182/244 (75%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 || || ||||| |||||||| | |||||||| || | | | || | | ||| |||||| Sbjct 4729 TTTTTCATCTCGTCATTCCAAAGGTTTCTCTCTGTCAGATCCCTCAATAAATGTGGATTA 4670 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || |||||||||||||||||||| || | || ||| |||||||| || || || || Sbjct 4669 ACAACTTGAAATTCTCCAGACAAAACGCGCCTCACGTACATATTACTCGTGTAAGGCTCA 4610 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | || || ||||| ||||||||||| ||||| || || |||||||| || |||| | | Sbjct 4609 ATTGATTCGTTATTGCCCAAAATTTGTGCAGTCGAGGCCGTCGGCATTGGCGCCAATAGT 4550 Query 53267 AAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAA 53324 ||| ||| | | ||| ||||| || ||||| ||||| || | | |||||| ||| | Sbjct 4549 AAAGAATTCCGCACACC--ATGTTTTGCAATTTTTTCTTTCAGCGCTGCCCAATCCCATA 4492 Query 53325 GATC 53328 |||| Sbjct 4491 GATC 4488 Score = 140 bits (154), Expect = 4e-28 Identities = 225/321 (70%), Gaps = 12/321 (4%) Strand=Plus/Minus Query 53548 AATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATT 53607 |||||| |||||||| || | | |||| || ||| || ||| |||| ||||||||||| Sbjct 4111 AATACCCATAGGTCTGTGGCGCATATTTGAATTTTTAGTTTCAGGAAGTGGATAATAATT 4052 Query 53608 AATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTT 53664 |||| || | ||| ||||| || | | || ||| |||| ||| |||||||||| Sbjct 4051 CCTATCAATGACTTTGTTGAGATTACGAGTCACTATT--TTTG-TAACAGCCTTCAGTTT 3995 Query 53665 GAGAAAATCAAA------TTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAG 53718 ||||||| | || | || |||||||||| || | ||||| ||||||| Sbjct 3994 TTCAAAATCATATGTCTTTTTTGCAGTATTTACAAACATATTGACAGCAATGGATGCCAA 3935 Query 53719 ATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 53778 ||||| || || || || | || | | ||| ||||| ||||| || || |||||||| Sbjct 3934 GTTACATACTGCAACTTCCTCAGGACTTGAATACTGTATAATCTCTGTACAGAGATTACT 3875 Query 53779 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 53838 || ||| || |||||||||| ||| ||||| || ||||| ||| || || || Sbjct 3874 ACTCTTAATTGTTCCTAAATGTTGCTGATTGGATTTGCGATTACAATGATCTTTGTACAG 3815 Query 53839 AATGAATGGCGTACCAGTTTC 53859 || | ||||| || ||||| Sbjct 3814 CATATACGGCGTGCCTGTTTC 3794 Score = 111 bits (122), Expect = 2e-19 Identities = 171/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 || |||||||| || | ||| | |||| ||| | || || || ||||| ||||| Sbjct 3043 CTGGACATTTGCTGCCTCAAAGTGCACGCAGAAAAAAGCGTTGGTGACGCGTGAGTAAAG 2984 Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATT 54523 || ||||| | || ||||| || || || || |||| ||| || ||| || Sbjct 2983 TATCGCTCAGACATTAAGTTGTAAGTTTCAATTACTTTATCTACATCATTTTCATGGATG 2924 Query 54524 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 54583 | || || || | ||||||||| || ||||| ||||| | | |||| | ||||||| Sbjct 2923 GCAACAGCCACTCTCATTAACATATGTTGAGGCCTTTCGGCAACCTTGCCATCTATTTTC 2864 Query 54584 AGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 54643 ||||| ||| | |||| || |||||||||||||| || ||||| |||||| || || Sbjct 2863 AGCAAATAGCTTCTTTCTAATGTTTTAAAACCAAAGTAATTGTAGCCAAAGTCACGATCA 2804 Query 54644 TAAA 54647 |||| Sbjct 2803 TAAA 2800 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 ||| || || |||||||| |||| | | |||||||||| | || ||||| || Sbjct 3637 TTCGAATTCTTCTCCCCAGACATCAGCAAGACCAGGACATTGGTGAGGGCACATTAAACT 3578 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| || ||||| | | ||||||||||| ||||||||||||||||| || ||| Sbjct 3577 CCAGGTGCCACCATCCATAGCACGTTTCATAAATAGATCAGGAATCCAAAGGGCGTAAAA 3518 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 54103 || ||||| | || | |||||| |||||| || Sbjct 3517 AAGTTCTCTAGCTCGAGTTTCCTCATTTCCTATA 3484 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 |||| ||||||||||| | ||| |||| ||||||| |||||| ||||||| |||||| | Sbjct 3404 TATTTTTTTTAAGATCCAAGAATTCCATTATATCAGCATGCCATGGTTCCACGTATATAG 3345 Query 54162 TCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 54221 | ||||||| | |||||||| ||||| || | |||| || ||||| ||| Sbjct 3344 CAAATGCTCCAGGTCTCTTGTTTCCACCCTGGTCAACATATCGTGCCACATTATTGAAAA 3285 Query 54222 CTCTCAACATTGGAA 54236 | | | ||||||| Sbjct 3284 GTTTGAGTATTGGAA 3270 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 53458 |||| ||||| | | ||| ||||||||||| ||||| ||||| || ||||| || ||| Sbjct 4333 TATGTGCCTTCTTCTTTAGCCAGTTCACAACTAGCCTCCAATGCTCCATAATATATAGTT 4274 Query 53459 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 53518 ||||| || | |||| || | ||| |||||| || ||||| |||||| | | | Sbjct 4273 TCGAAAATTTGAATATTAAGCTTTTGAGCTTCCTCACTTTCAAACGGATAACGCATCAAA 4214 Query 53519 ATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553 | ||| || || || || || || | || ||||| Sbjct 4213 AGAAATGCATCGGCCAAGCCCTGTATTCCTATACC 4179 >seq295 Length=3859974 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 54470 TCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 54529 ||||| | |||||| || ||||| ||| || || ||| | || ||| ||| | | Sbjct 1466980 TCAGACATTAGATTATAAGTCTCAATAACTTTATCAATAGCATCTTCATGGATTGCAATA 1467039 Query 54530 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAG 54589 || || | ||||| ||| ||||| ||||||||||||| ||| || |||||||| | Sbjct 1467040 GCAACTCTCATTATCATATGCTGGGGTCTTTCAACGACTTTGCCATTGATTTTCAGAAGA 1467099 Query 54590 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 54649 || || ||||| | |||||| ||||| ||||| || |||||| ||| | || | Sbjct 1467100 TAATTTTCTTCCAGTGATTTAAAGCCAAAGTAGTTATAATCAAAGTCGCGTCCATATACT 1467159 Query 54650 ATAACTGAGTTGAGTTTATC 54669 || ||||| || ||| |||| Sbjct 1467160 ATTACTGAATTTAGTATATC 1467179 >seq648 Length=307961 Score = 89.7 bits (98), Expect = 6e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 54478 TAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 54537 || |||||| ||||| || || || || || || |||||| | || || | Sbjct 4094 TAAATTGTAAGTCTCAATGACTTTTTCAATGTCATCTTCGTGAATTGAAATAGCAACTCT 4153 Query 54538 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTT 54597 ||||||||| |||||||||||||| || | |||| |||||| || || || || ||| Sbjct 4154 CATTAACATATGCTGAGGTCTTTCGACAACCTTGCCGTTTATCTTTAGTAAAAAGCTTTT 4213 Query 54598 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGA 54657 ||||| |||||||| ||||| || || || |||||| || || || | || || || Sbjct 4214 TTCCAGTGTTTTAAAGCCAAAGTAATTATAATCAAAGTCGCGATCATATACTATTACAGA 4273 Query 54658 GTTGAGT 54664 || ||| Sbjct 4274 ATTTAGT 4280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593706935076480