Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq255 104 2e-17 seq188 95.1 1e-14 >seq255 Length=939575 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| |||| || ||||||||||| ||| ||| | || Sbjct 827830 ATGCAGATCTTCGTGAAAACTCTGACTGGGAAAACCATTACATTAGAAGTAGAAGCTTCA 827889 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | ||| |||||| || |||||||| | || |||||| Sbjct 827890 GATACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAG 827949 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | |||||||| || |||||||| ||||| || || | |||| ||||| Sbjct 827950 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAAC 828009 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || |||||||||||||||||| | || | ||| | || ||||| Sbjct 828010 ATCCAAAAGGAATCTACTCTTCACTTAGTTCTTCGACTTCGTGGAGG 828056 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || || || || |||||||| || |||| ||| | || Sbjct 827602 ATGCAGATTTTTGTTAAGACCTTAACAGGAAAAACCATCACTCTCGAAGTCGAAGCTTCA 827661 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || |||| || || ||||||||||| | || |||||| Sbjct 827662 GATACTATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGCATTCCTCCAGATCAG 827721 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | |||||||| || |||||||| ||||| || || | |||| ||||| Sbjct 827722 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAAC 827781 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || |||||||||||||||||| | || | ||| | || ||||| Sbjct 827782 ATCCAAAAGGAATCTACTCTTCACTTAGTTCTTCGACTTCGTGGAGG 827828 >seq188 Length=1630868 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| |||||| |||| || | || || || ||||| ||| ||| ||| || | Sbjct 124103 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 124162 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | || | || |||||| ||||| ||||| | || |||||| Sbjct 124163 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 124222 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || | |||||||| || ||||| || || ||| | ||| | | || ||||| Sbjct 124223 GCAGAGGTTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGAACATTATCTGACTACAA 124282 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||| |||||||||||||| |||| Sbjct 124283 TATTCAGAAAGAATCTACTCTTCATTTGGT 124312 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| |||||| |||| || | || || || ||||| ||| ||| ||| || | Sbjct 122963 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 123022 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | || | || |||||| ||||| ||||| | || |||||| Sbjct 123023 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 123082 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || | |||||||| || || ||||| |||||| ||| | | |||||||| Sbjct 123083 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAA 123142 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||||||||||| || ||||| |||| Sbjct 123143 CATTCAGAAGGAATCCACCCTTCATCTGGT 123172 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| |||||| |||| || | || || || ||||| ||| ||| ||| || | Sbjct 123191 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 123250 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | || | || |||||| ||||| ||||| | || |||||| Sbjct 123251 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 123310 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || | |||||||| || || ||||| |||||| ||| | | |||||||| Sbjct 123311 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAA 123370 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||||||||||| || ||||| |||| Sbjct 123371 CATTCAGAAGGAATCCACCCTTCATCTGGT 123400 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| |||||| |||| || | || || || ||||| ||| ||| ||| || | Sbjct 123419 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 123478 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | || | || |||||| ||||| ||||| | || |||||| Sbjct 123479 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 123538 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || | |||||||| || || ||||| |||||| ||| | | |||||||| Sbjct 123539 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAA 123598 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||||||||||| || ||||| |||| Sbjct 123599 CATTCAGAAGGAATCCACCCTTCATCTGGT 123628 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| |||||| |||| || | || || || ||||| ||| ||| ||| || | Sbjct 123647 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 123706 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | || | || |||||| ||||| ||||| | || |||||| Sbjct 123707 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 123766 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || | |||||||| || ||||| || || ||| | ||| | | || || || Sbjct 123767 GCAGAGGTTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGAACATTATCTGACTATAA 123826 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||| |||||||||||||| |||| Sbjct 123827 TATTCAGAAAGAATCTACTCTTCATTTGGT 123856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428325684598280